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Sample GSM106169 Query DataSets for GSM106169
Status Public on Sep 27, 2006
Title ALLREZ.P3
Sample type RNA
 
Source name bone marrow (freshly isolated mononuclear cells)
Organism Homo sapiens
Characteristics Age at relapse diagnosis [years]: 13.8
Sex: female
Immunophenotype: common
Time of relapse: early
Site of relapse: isolated BM
ALL-REZ BFM risk group: high (S3)
Peripheral blast count at relapse diagnosis per microliter: 45045
Minimal residual disease (after 2 induction cycles): NA
Genetic features: TEL-AML1 positive
S and G2/M phase cells [%]: 6.75
Frontline therapy: ALL-BFM 2000 SR
Extracted molecule total RNA
Label Biotin
 
Description first relapse acute lymphocytic leukemia
Data processing Probe level normalization: calibration and variance stabilization (Huber et al. PMID: 12169536). Probe-set summarization: median polish on the normalized data (Irrizary et al. PMID: 12582260).
 
Submission date Apr 21, 2006
Last update date Nov 14, 2018
Contact name Renate Kirschner-Schwabe
E-mail(s) R.Kirschner@charite.de
Phone +4930450566088
Fax +4930450566946
URL http://www.charite.de/paedonko
Organization name Charité - Universitätsmedizin Berlin
Department Pediatric Oncology/Hematology
Lab Molecular Genetics
Street address Augustenburger Platz 1
City Berlin
ZIP/Postal code 12167
Country Germany
 
Platform ID GPL96
Series (1)
GSE4698 Molecular characterization of very early relapsed childhood ALL
Relations
Reanalyzed by GSE122505

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsinh (log-like) scale

Data table
ID_REF VALUE
1007_s_at 2.93113393611017
1053_at 2.69946221342891
117_at 1.89325085811264
121_at 3.44100312123291
1255_g_at 0.860878271903842
1294_at 3.92442852243275
1316_at 1.70162095000794
1320_at 1.33483866625281
1405_i_at 2.28912583162290
1431_at 0.910424029348493
1438_at 2.34244337646522
1487_at 2.57173204433879
1494_f_at 2.13154596970154
1598_g_at 3.30155914983252
160020_at 2.97167243808717
1729_at 2.65625594379866
1773_at 1.95984144830448
177_at 1.58994171092858
179_at 3.71700840940579
1861_at 2.25910566084415

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.




Supplementary file Size Download File type/resource
GSM106169.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM106169.EXP.gz 486 b (ftp)(http) EXP

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