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GEO accession:
Sample GSM111768
Query DataSets for GSM111768
Status
Public on Sep 22, 2006
Title
wt vs dozi 1
Sample type
RNA
Channel 1
Source name
Plasmodium berghei wt
Organism
Plasmodium berghei
Characteristics
genotype: wild type
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
Plasmodium berghei wt mutant 1
Organism
Plasmodium berghei
Characteristics
genotype: mutant 1
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent Technologies
Scan protocol
Axon GenePix
Description
Agilent Technologies labeling kit
Data processing
GenePix/TIGR MIDAS
Submission date
May 30, 2006
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
gdimopo1@jhu.edu
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL3824
Series (1)
GSE5889
Regulation of sexual development of Plasmodium by translational repression.
Data table header descriptions
ID_REF
F635 Median
F635 Median
F635 Mean
F635 Mean
F635 SD
F635 SD
B635 Median
B635 Median
B635 Mean
B635 Mean
B635 SD
B635 SD
% > B635+1SD
% > B635+1SD
% > B635+2SD
% > B635+2SD
F635 % Sat.
F635 % Sat.
F532 Median
F532 Median
F532 Mean
F532 Mean
F532 SD
F532 SD
B532 Median
B532 Median
B532 Mean
B532 Mean
B532 SD
B532 SD
% > B532+1SD
% > B532+1SD
% > B532+2SD
% > B532+2SD
F532 % Sat.
F532 % Sat.
Ratio of Medians
Ratio of Medians
Ratio of Means
Ratio of Means
Median of Ratios
Median of Ratios
Mean of Ratios
Mean of Ratios
Ratios SD
Ratios SD
Rgn Ratio
Rgn Ratio
Rgn R?
Rgn R?
F Pixels
F Pixels
B Pixels
B Pixels
Sum of Medians
Sum of Medians
Sum of Means
Sum of Means
VALUE
Log2 ratio
F635 Median - B635
F635 Median - B635
F532 Median - B532
F532 Median - B532
F635 Mean - B635
F635 Mean - B635
F532 Mean - B532
F532 Mean - B532
Flags
Spot Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians
Ratio of Means
Median of Ratios
Mean of Ratios
Ratios SD
Rgn Ratio
Rgn R?
F Pixels
B Pixels
Sum of Medians
Sum of Means
VALUE
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
Flags
PB000000.00.0
139
180
298
35
43
24
96
85
0
172
235
511
35
43
27
97
91
0
0.759
0.725
0.769
0.805
2.849
0.174
0.034
80
513
241
345
-0.398
104
137
145
200
Bad
PB000000.01.0
2793
3641
2162
32
52
253
100
100
0
682
861
513
36
43
29
98
98
0
4.274
4.375
4.304
4.368
1.455
4.588
0.857
120
541
3407
4434
2.096
2761
646
3609
825
Good
PB000001.00.0
195
229
170
31
38
20
97
92
0
203
217
99
38
43
22
97
95
0
0.994
1.106
0.955
0.991
2.251
1.559
0.355
120
588
329
377
-0.009
164
165
198
179
Bad
PB000001.01.0
834
843
288
37
46
32
96
95
0
405
435
159
42
48
31
99
99
0
2.196
2.051
2.202
1.881
2.498
2.258
0.678
120
565
1160
1199
1.135
797
363
806
393
Good
PB000001.03.0
2177
2460
1119
33
41
23
100
100
0
2016
2183
966
39
44
23
100
100
0
1.084
1.132
1.15
1.115
1.723
1.145
0.888
120
556
4121
4571
0.117
2144
1977
2427
2144
Bad
PB000002.00.0
281
304
255
32
38
19
95
95
0
431
460
171
36
42
22
98
98
0
0.63
0.642
0.61
0.542
2.41
0.853
0.441
120
570
644
696
-0.666
249
395
272
424
Good
PB000002.01.0
563
606
226
36
43
23
100
100
0
583
627
204
40
45
24
100
100
0
0.971
0.971
0.979
0.958
1.517
1.004
0.781
120
570
1070
1157
-0.043
527
543
570
587
Bad
PB000002.02.0
805
809
244
34
42
30
100
100
0
1199
1173
367
37
44
23
99
99
0
0.664
0.682
0.672
0.686
1.388
0.658
0.867
120
612
1933
1911
-0.592
771
1162
775
1136
Good
PB000002.03.0
243
1257
5078
34
40
21
95
93
0
266
848
3453
40
47
30
96
94
0
0.925
1.514
0.858
0.896
2.689
3.142
0.079
120
557
435
2031
-0.113
209
226
1223
808
Good
PB000003.00.0
1602
1800
1081
33
41
22
98
98
0
2198
2548
1234
38
43
23
100
98
0
0.726
0.704
0.74
0.639
1.895
0.729
0.825
120
611
3729
4277
-0.461
1569
2160
1767
2510
Good
PB000003.01.0
532
556
241
37
47
35
95
93
0
672
685
266
41
48
27
99
98
0
0.784
0.806
0.84
0.759
1.93
0.802
0.753
120
610
1126
1163
-0.35
495
631
519
644
Bad
PB000003.02.0
122
143
108
32
38
20
93
84
0
140
152
65
38
43
23
96
85
0
0.882
0.974
1.001
0.879
2.994
1.388
0.224
120
554
192
225
-0.181
90
102
111
114
Bad
PB000003.03.0
1652
2464
3620
33
40
23
100
100
0
2262
2428
1004
40
46
25
100
100
0
0.729
1.018
0.734
0.821
1.734
2.636
0.327
120
540
3841
4819
-0.457
1619
2222
2431
2388
Good
PB000004.00.0
327
357
182
32
39
24
100
100
0
305
327
151
39
45
26
98
98
0
1.109
1.128
1.044
1.15
2.154
1.087
0.445
120
596
561
613
0.149
295
266
325
288
Bad
PB000004.01.0
1325
1348
486
35
40
21
100
100
0
1260
1288
422
40
46
28
100
100
0
1.057
1.052
1.053
1.014
1.558
1.07
0.858
120
569
2510
2561
0.08
1290
1220
1313
1248
Good
PB000004.02.0
1069
1378
1471
33
41
25
100
100
0
942
1024
577
36
42
23
99
97
0
1.143
1.361
1.177
1.281
1.936
2.307
0.459
120
650
1942
2333
0.193
1036
906
1345
988
Good
PB000004.03.0
105
113
57
32
51
117
18
1
0
144
149
70
37
47
53
82
50
0
0.682
0.723
0.66
0.649
2.728
1.854
0.12
80
522
180
193
-0.552
73
107
81
112
Bad
PB000005.00.0
162
174
80
34
41
38
95
79
0
197
208
99
38
45
29
98
94
0
0.805
0.824
0.805
0.789
2.551
0.836
0.35
120
557
287
310
-0.313
128
159
140
170
Good
PB000005.01.0
89
103
55
33
39
19
86
70
0
130
147
68
37
43
24
97
83
0
0.602
0.636
0.599
0.565
2.603
0.554
0.241
80
504
149
180
-0.732
56
93
70
110
Bad
PB000005.03.0
399
426
151
34
41
26
100
100
0
288
291
96
37
48
67
97
89
0
1.454
1.543
1.543
1.588
1.585
1.487
0.504
120
612
616
646
0.54
365
251
392
254
Good
Total number of rows:
5283
Table truncated, full table size
819 Kbytes
.
Supplementary data files not provided
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