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Sample GSM111768 Query DataSets for GSM111768
Status Public on Sep 22, 2006
Title wt vs dozi 1
Sample type RNA
 
Channel 1
Source name Plasmodium berghei wt
Organism Plasmodium berghei
Characteristics genotype: wild type
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Plasmodium berghei wt mutant 1
Organism Plasmodium berghei
Characteristics genotype: mutant 1
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent Technologies
Scan protocol Axon GenePix
Description Agilent Technologies labeling kit
Data processing GenePix/TIGR MIDAS
 
Submission date May 30, 2006
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL3824
Series (1)
GSE5889 Regulation of sexual development of Plasmodium by translational repression.

Data table header descriptions
ID_REF
F635 Median F635 Median
F635 Mean F635 Mean
F635 SD F635 SD
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
% > B635+1SD % > B635+1SD
% > B635+2SD % > B635+2SD
F635 % Sat. F635 % Sat.
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
B532 Median B532 Median
B532 Mean B532 Mean
B532 SD B532 SD
% > B532+1SD % > B532+1SD
% > B532+2SD % > B532+2SD
F532 % Sat. F532 % Sat.
Ratio of Medians Ratio of Medians
Ratio of Means Ratio of Means
Median of Ratios Median of Ratios
Mean of Ratios Mean of Ratios
Ratios SD Ratios SD
Rgn Ratio Rgn Ratio
Rgn R? Rgn R?
F Pixels F Pixels
B Pixels B Pixels
Sum of Medians Sum of Medians
Sum of Means Sum of Means
VALUE Log2 ratio
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
Flags Spot Flags

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R? F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
PB000000.00.0 139 180 298 35 43 24 96 85 0 172 235 511 35 43 27 97 91 0 0.759 0.725 0.769 0.805 2.849 0.174 0.034 80 513 241 345 -0.398 104 137 145 200 Bad
PB000000.01.0 2793 3641 2162 32 52 253 100 100 0 682 861 513 36 43 29 98 98 0 4.274 4.375 4.304 4.368 1.455 4.588 0.857 120 541 3407 4434 2.096 2761 646 3609 825 Good
PB000001.00.0 195 229 170 31 38 20 97 92 0 203 217 99 38 43 22 97 95 0 0.994 1.106 0.955 0.991 2.251 1.559 0.355 120 588 329 377 -0.009 164 165 198 179 Bad
PB000001.01.0 834 843 288 37 46 32 96 95 0 405 435 159 42 48 31 99 99 0 2.196 2.051 2.202 1.881 2.498 2.258 0.678 120 565 1160 1199 1.135 797 363 806 393 Good
PB000001.03.0 2177 2460 1119 33 41 23 100 100 0 2016 2183 966 39 44 23 100 100 0 1.084 1.132 1.15 1.115 1.723 1.145 0.888 120 556 4121 4571 0.117 2144 1977 2427 2144 Bad
PB000002.00.0 281 304 255 32 38 19 95 95 0 431 460 171 36 42 22 98 98 0 0.63 0.642 0.61 0.542 2.41 0.853 0.441 120 570 644 696 -0.666 249 395 272 424 Good
PB000002.01.0 563 606 226 36 43 23 100 100 0 583 627 204 40 45 24 100 100 0 0.971 0.971 0.979 0.958 1.517 1.004 0.781 120 570 1070 1157 -0.043 527 543 570 587 Bad
PB000002.02.0 805 809 244 34 42 30 100 100 0 1199 1173 367 37 44 23 99 99 0 0.664 0.682 0.672 0.686 1.388 0.658 0.867 120 612 1933 1911 -0.592 771 1162 775 1136 Good
PB000002.03.0 243 1257 5078 34 40 21 95 93 0 266 848 3453 40 47 30 96 94 0 0.925 1.514 0.858 0.896 2.689 3.142 0.079 120 557 435 2031 -0.113 209 226 1223 808 Good
PB000003.00.0 1602 1800 1081 33 41 22 98 98 0 2198 2548 1234 38 43 23 100 98 0 0.726 0.704 0.74 0.639 1.895 0.729 0.825 120 611 3729 4277 -0.461 1569 2160 1767 2510 Good
PB000003.01.0 532 556 241 37 47 35 95 93 0 672 685 266 41 48 27 99 98 0 0.784 0.806 0.84 0.759 1.93 0.802 0.753 120 610 1126 1163 -0.35 495 631 519 644 Bad
PB000003.02.0 122 143 108 32 38 20 93 84 0 140 152 65 38 43 23 96 85 0 0.882 0.974 1.001 0.879 2.994 1.388 0.224 120 554 192 225 -0.181 90 102 111 114 Bad
PB000003.03.0 1652 2464 3620 33 40 23 100 100 0 2262 2428 1004 40 46 25 100 100 0 0.729 1.018 0.734 0.821 1.734 2.636 0.327 120 540 3841 4819 -0.457 1619 2222 2431 2388 Good
PB000004.00.0 327 357 182 32 39 24 100 100 0 305 327 151 39 45 26 98 98 0 1.109 1.128 1.044 1.15 2.154 1.087 0.445 120 596 561 613 0.149 295 266 325 288 Bad
PB000004.01.0 1325 1348 486 35 40 21 100 100 0 1260 1288 422 40 46 28 100 100 0 1.057 1.052 1.053 1.014 1.558 1.07 0.858 120 569 2510 2561 0.08 1290 1220 1313 1248 Good
PB000004.02.0 1069 1378 1471 33 41 25 100 100 0 942 1024 577 36 42 23 99 97 0 1.143 1.361 1.177 1.281 1.936 2.307 0.459 120 650 1942 2333 0.193 1036 906 1345 988 Good
PB000004.03.0 105 113 57 32 51 117 18 1 0 144 149 70 37 47 53 82 50 0 0.682 0.723 0.66 0.649 2.728 1.854 0.12 80 522 180 193 -0.552 73 107 81 112 Bad
PB000005.00.0 162 174 80 34 41 38 95 79 0 197 208 99 38 45 29 98 94 0 0.805 0.824 0.805 0.789 2.551 0.836 0.35 120 557 287 310 -0.313 128 159 140 170 Good
PB000005.01.0 89 103 55 33 39 19 86 70 0 130 147 68 37 43 24 97 83 0 0.602 0.636 0.599 0.565 2.603 0.554 0.241 80 504 149 180 -0.732 56 93 70 110 Bad
PB000005.03.0 399 426 151 34 41 26 100 100 0 288 291 96 37 48 67 97 89 0 1.454 1.543 1.543 1.588 1.585 1.487 0.504 120 612 616 646 0.54 365 251 392 254 Good

Total number of rows: 5283

Table truncated, full table size 819 Kbytes.




Supplementary data files not provided

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