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Sample GSM111769 Query DataSets for GSM111769
Status Public on Sep 22, 2006
Title wt vs dozi 2
Sample type RNA
 
Channel 1
Source name Plasmodium berghei wt
Organism Plasmodium berghei
Characteristics genotype: wild type
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Plasmodium berghei wt mutant 2
Organism Plasmodium berghei
Characteristics genotype: mutant 2
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent Technologies
Scan protocol Axon GenePix
Description Agilent Technologies labeling kit
Data processing GenePix/TIGR MIDAS
 
Submission date May 30, 2006
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL3824
Series (1)
GSE5889 Regulation of sexual development of Plasmodium by translational repression.

Data table header descriptions
ID_REF
F635 Median F635 Median
F635 Mean F635 Mean
F635 SD F635 SD
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
% > B635+1SD % > B635+1SD
% > B635+2SD % > B635+2SD
F635 % Sat. F635 % Sat.
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
B532 Median B532 Median
B532 Mean B532 Mean
B532 SD B532 SD
% > B532+1SD % > B532+1SD
% > B532+2SD % > B532+2SD
F532 % Sat. F532 % Sat.
Ratio of Medians Ratio of Medians
Ratio of Means Ratio of Means
Median of Ratios Median of Ratios
Mean of Ratios Mean of Ratios
Ratios SD Ratios SD
Rgn Ratio Rgn Ratio
Rgn R? Rgn R?
F Pixels F Pixels
B Pixels B Pixels
Sum of Medians Sum of Medians
Sum of Means Sum of Means
VALUE Log2 ratio
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
Flags Spot Flags

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R? F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
PB000000.00.0 66 80 74 34 42 27 52 30 0 128 137 84 39 47 37 76 58 0 0.36 0.469 0.527 0.498 3.678 0.591 0.332 120 592 121 144 -1.476 32 89 46 98 Bad
PB000000.01.0 5042 5062 1564 35 44 33 99 99 0 2935 3078 961 41 51 59 99 98 0 1.73 1.655 1.681 1.659 1.238 1.67 0.964 120 540 7901 8064 0.791 5007 2894 5027 3037 Good
PB000001.00.0 76 104 158 31 38 22 80 50 0 158 175 79 37 43 27 97 92 0 0.372 0.529 0.378 0.426 2.375 1.097 0.201 80 552 166 211 -1.427 45 121 73 138 Bad
PB000001.01.0 699 683 214 32 39 20 99 99 0 845 832 229 41 47 25 99 98 0 0.83 0.823 0.826 0.828 1.617 0.812 0.876 120 571 1471 1442 -0.27 667 804 651 791 Good
PB000001.03.0 4251 4447 1647 33 39 20 99 98 0 9758 10496 3566 39 47 25 99 99 0 0.434 0.422 0.425 0.41 1.282 0.425 0.974 120 556 13937 14871 -1.204 4218 9719 4414 10457 Bad
PB000002.00.0 412 407 129 36 43 25 96 96 0 1526 1522 438 45 52 32 99 98 0 0.254 0.251 0.25 0.236 1.509 0.245 0.913 120 586 1857 1848 -1.978 376 1481 371 1477 Good
PB000002.01.0 343 372 155 30 37 20 99 98 0 1321 1376 545 37 43 23 97 97 0 0.244 0.255 0.248 0.248 1.422 0.246 0.889 120 584 1597 1681 -2.036 313 1284 342 1339 Bad
PB000002.02.0 888 880 275 32 39 19 99 99 0 2709 2653 751 38 45 26 100 100 0 0.32 0.324 0.322 0.32 1.283 0.32 0.946 120 610 3527 3463 -1.642 856 2671 848 2615 Good
PB000002.03.0 177 194 95 40 47 27 97 88 0 461 482 200 46 53 29 99 98 0 0.33 0.353 0.365 0.329 1.807 0.337 0.676 120 540 552 590 -1.599 137 415 154 436 Good
PB000003.00.0 1308 1451 659 31 38 20 100 100 0 4785 5310 2259 38 44 24 100 99 0 0.269 0.269 0.273 0.268 1.301 0.27 0.954 120 525 6024 6692 -1.894 1277 4747 1420 5272 Good
PB000003.01.0 815 811 288 34 40 21 98 98 0 2132 2025 716 40 47 26 97 97 0 0.373 0.391 0.387 0.407 1.497 0.381 0.926 120 542 2873 2762 -1.421 781 2092 777 1985 Bad
PB000003.02.0 127 125 57 34 43 38 76 58 0 267 284 120 40 48 38 100 95 0 0.41 0.373 0.36 0.344 2.249 0.333 0.448 80 518 320 335 -1.287 93 227 91 244 Bad
PB000003.03.0 1343 1419 564 30 39 24 100 99 0 4997 5424 2103 41 46 27 100 99 0 0.265 0.258 0.26 0.258 1.334 0.256 0.942 120 555 6269 6772 -1.916 1313 4956 1389 5383 Good
PB000004.00.0 244 250 86 32 38 20 100 99 0 420 420 128 38 43 22 100 100 0 0.555 0.571 0.582 0.559 1.705 0.527 0.726 120 540 594 600 -0.85 212 382 218 382 Bad
PB000004.01.0 1032 1050 360 36 44 30 100 99 0 2831 2838 898 40 49 30 100 99 0 0.357 0.362 0.37 0.361 1.282 0.359 0.949 120 541 3787 3812 -1.487 996 2791 1014 2798 Good
PB000004.02.0 1741 2459 1998 31 40 29 99 99 0 2985 4044 2996 38 46 30 99 99 0 0.58 0.606 0.574 0.572 1.339 0.628 0.973 120 646 4657 6434 -0.785 1710 2947 2428 4006 Good
PB000004.03.0 143 152 76 31 38 18 91 87 0 320 323 141 38 44 24 95 95 0 0.397 0.425 0.433 0.402 2.125 0.488 0.628 120 589 394 406 -1.332 112 282 121 285 Bad
PB000005.00.0 120 123 56 32 39 22 91 80 0 304 319 103 37 47 37 100 99 0 0.33 0.323 0.304 0.3 1.97 0.275 0.449 120 557 355 373 -1.601 88 267 91 282 Good
PB000005.01.0 99 108 94 31 38 26 79 59 0 235 249 91 38 47 36 99 95 0 0.345 0.365 0.341 0.296 2.491 0.426 0.326 120 525 265 288 -1.535 68 197 77 211 Bad
PB000005.03.0 330 340 129 35 41 23 99 99 0 482 492 177 41 47 27 99 99 0 0.669 0.676 0.696 0.674 1.623 0.653 0.781 120 570 736 756 -0.58 295 441 305 451 Good

Total number of rows: 5283

Table truncated, full table size 825 Kbytes.




Supplementary data files not provided
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