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Sample GSM111774 Query DataSets for GSM111774
Status Public on Jun 06, 2006
Title 2B3 female D. melanogaster, biological rep2
Sample type RNA
 
Source name 2B3 female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy3
 
Description 2B3 female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 1260.4444 23.4691 1391.0 23.0 1421.9655 23.049 153.0 243.0 192848.0 5703.0 619.7338 2.933 0.7536 0.0 153.0 0.0 1.0 0.0 39.0 30.0 12.0 0.8259 -0.3573 0.7447 39.3573 29.2552 39.4 30.3 1.1058 0.0609 1.1041 13.7511 14.2498 0 0 0 0 0 0 0 0 0 0 0 0
2 0 32.9658 23.3003 33.0 23.0 33.0701 22.9629 117.0 323.0 3857.0 7526.0 4.8161 2.8804 0.7597 0.0 117.0 0.0 1.0 0.0 61.0 29.0 12.0 0.6269 0.5585 -0.2847 60.4414 29.2847 60.7 29.2 0.2802 0.2765 -0.0453 11.6998 12.8821 0 0 0 0 0 0 0 0 0 0 0 0
3 0 48.6776 23.5527 49.0 23.0 52.0 21.9809 121.0 275.0 5890.0 6477.0 6.9866 3.0771 0.7756 0.0 121.0 0.0 1.0 0.0 82.0 30.0 12.0 0.8782 0.5484 0.6859 81.4515 29.314 81.7 29.5 0.3561 0.2839 0.2149 12.0043 12.949 0 0 0 0 0 0 0 0 0 0 0 0
4 0 60.7952 23.3993 62.0 23.0 65.3255 22.9531 127.0 313.0 7721.0 7324.0 11.0048 2.8504 0.8193 0.0 127.0 0.0 1.0 0.0 103.0 28.0 12.0 1.3841 0.3324 -1.3435 102.6675 29.3435 102. 28.3 0.9918 0.2852 -0.9498 12.365 13.1549 0 0 0 0 0 0 0 0 0 0 0 0
5 0 61.2911 23.6631 61.0 23.0 63.4642 23.0 158.0 282.0 9684.0 6673.0 10.0714 3.1561 0.79 0.0 158.0 0.0 1.0 0.0 124.0 30.0 14.0 0.6808 0.2653 0.627 123.7346 29.3729 123. 29.5 0.1928 0.0311 0.1903 14.1909 14.2558 0 0 0 0 0 0 0 0 0 0 0 0
6 0 41.7606 23.5214 42.0 23.0 42.5609 23.0666 117.0 303.0 4886.0 7127.0 5.2357 2.7941 0.75 0.0 117.0 0.0 1.0 0.0 146.0 29.0 12.0 1.0713 0.9927 -0.4026 145.0072 29.4026 145. 28.8 0.7823 0.5226 -0.5821 12.1169 12.4323 0 0 0 0 0 0 0 0 0 0 0 0
7 0 801.95 24.7525 867.0 24.0 875.2352 24.3407 180.0 198.0 144351.0 4901.0 298.8854 4.9025 0.891 0.0 180.0 0.0 1.0 0.0 166.0 30.0 14.0 0.5827 -0.1308 0.5678 166.1308 29.4321 166. 29.8 0.4013 0.1469 0.3734 14.9705 15.4027 0 0 0 0 0 0 0 0 0 0 0 0
8 0 278.3636 24.0671 306.0 23.0 312.6271 23.3515 143.0 253.0 39806.0 6089.0 91.9715 4.0743 0.9285 0.0 143.0 0.0 1.0 0.0 188.0 30.0 12.0 0.8037 0.5968 0.5382 187.4031 29.4617 187. 29.6 0.323 0.2332 0.2235 13.391 13.7147 0 0 0 0 0 0 0 0 0 0 0 0
9 0 90.9615 23.6838 95.0 23.0 98.1555 22.9225 130.0 310.0 11825.0 7342.0 19.5532 3.1617 0.8609 0.0 130.0 0.0 1.0 0.0 209.0 30.0 12.0 0.5922 0.3036 0.5085 208.6963 29.4914 209. 29.9 0.6504 0.4574 0.4623 12.694 13.1502 0 0 0 0 0 0 0 0 0 0 0 0
10 0 45.5847 24.1801 46.0 24.0 47.5238 23.0304 118.0 322.0 5379.0 7786.0 5.3223 3.4432 0.7712 0.0 118.0 0.0 1.0 0.0 230.0 29.0 12.0 0.5283 0.087 -0.521 229.9129 29.521 230. 28.7 0.8082 0.3582 -0.7244 12.2345 12.4011 0 0 0 0 0 0 0 0 0 0 0 0
11 0 364.8028 24.0738 411.5 24.0 425.5714 23.3999 142.0 298.0 51802.0 7174.0 122.2846 3.3799 0.9161 0.0 142.0 0.0 1.0 0.0 251.0 30.0 12.0 0.4705 -0.1396 0.4493 251.1396 29.5506 251. 30.0 0.6082 0.304 0.5267 13.1547 13.8526 0 0 0 0 0 0 0 0 0 0 0 0
12 0 67.7031 23.7089 68.0 23.0 69.0185 23.923 128.0 268.0 8666.0 6354.0 10.0229 3.5677 0.8258 0.0 128.0 0.0 1.0 0.0 273.0 30.0 12.0 0.6473 0.493 0.4195 272.5069 29.5804 273. 29.5 0.5636 0.5633 -0.0179 12.4806 13.1389 0 0 0 0 0 0 0 0 0 0 0 0
13 0 44.7016 23.3581 45.0 23.0 45.1333 22.992 124.0 296.0 5543.0 6914.0 6.0441 2.8212 0.7948 0.0 124.0 0.0 1.0 0.0 294.0 29.0 12.0 0.8661 0.6152 -0.6096 293.3847 29.6096 293. 29.2 0.4215 0.22 -0.3596 12.3679 12.8919 0 0 0 0 0 0 0 0 0 0 0 0
14 0 1445.5714 28.4322 1526.0 24.0 1549.9482 24.3394 147.0 273.0 212499.0 7762.0 602.0151 58.9414 0.98 0.0 147.0 0.0 1.0 0.0 314.0 29.0 12.0 0.639 0.0302 -0.6383 313.9697 29.6383 313. 28.9 0.6483 -0.0649 -0.6451 13.5335 13.9168 0 0 0 0 0 0 0 0 0 0 0 0
15 0 51.9519 23.6317 52.0 23.0 51.9142 22.9621 125.0 315.0 6494.0 7444.0 8.1347 2.8769 0.8116 0.0 125.0 0.0 1.0 0.0 335.0 30.0 12.0 0.4355 -0.2819 0.3319 335.2819 29.668 335. 29.7 0.0936 -0.0179 0.0919 12.4906 12.8749 0 0 0 0 0 0 0 0 0 0 0 0
16 0 62.3199 23.6095 63.0 23.0 62.5 22.6331 125.0 315.0 7790.0 7437.0 10.9014 3.2518 0.8116 0.0 125.0 0.0 1.0 0.0 357.0 29.0 12.0 0.8877 0.5491 -0.6975 356.4508 29.6975 356. 29.0 0.7089 0.2211 -0.6735 12.2082 13.1304 0 0 0 0 0 0 0 0 0 0 0 0
17 0 50.6319 23.9968 51.0 24.0 50.9285 23.1086 125.0 315.0 6329.0 7559.0 7.6383 3.0659 0.8278 0.0 125.0 0.0 1.0 0.0 378.0 30.0 12.0 0.274 0.0295 0.2724 377.9704 29.7275 378. 30.0 0.3518 0.1895 0.2964 12.5005 12.8785 0 0 0 0 0 0 0 0 0 0 0 0
18 0 20790.7929 24.8601 26327.5 24.0 28308.9648 23.2564 160.0 236.0 3326527.0 5867.0 11545.0996 5.3402 0.792 0.0 160.0 0.0 1.0 0.0 399.0 30.0 12.0 0.2552 0.0775 0.2431 398.9224 29.7568 399. 30.2 0.6414 0.4025 0.4994 14.0065 14.6438 0 0 0 0 0 0 0 0 0 0 0 0
19 0 57.1382 23.5353 58.0 24.0 62.5476 23.9333 123.0 297.0 7028.0 6990.0 9.1769 3.0714 0.7987 0.0 123.0 0.0 1.0 0.0 421.0 31.0 12.0 1.4817 0.8502 1.2135 420.1497 29.7864 420. 30.8 1.14 0.3786 1.0753 12.4326 12.7082 0 0 0 0 0 0 0 0 0 0 0 0
20 0 49.112 23.3848 50.0 23.0 50.1956 23.3372 116.0 304.0 5697.0 7109.0 6.6924 3.0917 0.7532 0.0 116.0 0.0 1.0 0.0 441.0 30.0 12.0 0.4782 -0.4414 0.1838 441.4414 29.8161 441. 29.8 0.1397 -0.1397 0.0028 12.0448 12.3799 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5534 Kbytes.




Supplementary file Size Download File type/resource
GSM111774.txt.gz 1.9 Mb (ftp)(http) TXT

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