NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM111778 Query DataSets for GSM111778
Status Public on Jun 06, 2006
Title 2B3 male D. melanogaster, biological rep2
Sample type RNA
 
Source name 2B3 male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description 2B3 male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 94.7457 48.3826 92.0 48.0 91.9186 46.0505 118.0 277.0 11180.0 13402.0 21.9023 5.827 0.7763 0.0 118.0 0.0 1.0 0.0 39.0 30.0 12.0 0.8259 -0.3573 0.7447 39.3573 29.2552 39.4 30.4 1.1792 0.0748 1.1769 12.139 12.4483 0 0 0 0 0 0 0 0 0 0 0 0
2 0 60.9655 47.787 60.0 48.0 60.8157 47.4603 116.0 324.0 7072.0 15483.0 7.0989 4.9734 0.7483 0.0 116.0 0.0 1.0 0.0 61.0 29.0 12.0 0.6269 0.5585 -0.2847 60.4414 29.2847 60.6 29.4 0.3099 0.231 0.2066 11.7856 12.6646 0 0 0 0 0 0 0 0 0 0 0 0
3 0 75.1583 47.5615 75.0 48.0 77.6999 48.5591 120.0 276.0 9019.0 13127.0 9.6228 5.2038 0.7792 0.0 120.0 0.0 1.0 0.0 82.0 30.0 12.0 0.8782 0.5484 0.6859 81.4515 29.314 81.7 29.6 0.4397 0.2734 0.3443 12.1794 12.6405 0 0 0 0 0 0 0 0 0 0 0 0
4 0 99.3706 48.0401 99.0 48.0 99.0789 46.6597 116.0 324.0 11527.0 15565.0 12.1503 6.4196 0.7532 0.0 116.0 0.0 1.0 0.0 103.0 28.0 12.0 1.3841 0.3324 -1.3435 102.6675 29.3435 103. 28.4 1.042 0.4704 -0.9298 12.1293 12.3323 0 0 0 0 0 0 0 0 0 0 0 0
5 0 83.6153 47.3732 85.0 47.0 85.4375 46.9401 156.0 284.0 13044.0 13454.0 10.022 4.8645 0.7839 0.0 156.0 0.0 1.0 0.0 124.0 30.0 14.0 0.6808 0.2653 0.627 123.7346 29.3729 123. 29.5 0.257 0.1564 0.2039 13.9274 14.358 0 0 0 0 0 0 0 0 0 0 0 0
6 0 66.8728 48.4569 66.0 49.0 66.7435 50.2527 118.0 302.0 7891.0 14634.0 8.1433 5.4252 0.7612 0.0 118.0 0.0 1.0 0.0 146.0 29.0 12.0 1.0713 0.9927 -0.4026 145.0072 29.4026 145. 28.9 0.7699 0.6029 -0.4789 11.8725 12.822 0 0 0 0 0 0 0 0 0 0 0 0
7 0 104.4528 48.694 105.0 48.0 106.3 46.1025 159.0 219.0 16608.0 10664.0 15.3199 5.2874 0.7832 0.0 159.0 0.0 1.0 0.0 166.0 30.0 14.0 0.5827 -0.1308 0.5678 166.1308 29.4321 166. 29.6 0.4189 0.3471 0.2345 14.0168 14.5336 0 0 0 0 0 0 0 0 0 0 0 0
8 0 162.9759 48.9372 164.0 48.0 163.1904 46.5307 125.0 271.0 20372.0 13262.0 25.6469 7.1488 0.8064 0.0 125.0 0.0 1.0 0.0 188.0 30.0 12.0 0.8037 0.5968 0.5382 187.4031 29.4617 187. 29.7 0.3233 0.2048 0.2502 12.3181 13.0122 0 0 0 0 0 0 0 0 0 0 0 0
9 0 96.3983 48.4637 96.0 48.0 101.4545 48.9724 123.0 317.0 11857.0 15363.0 11.6051 5.8225 0.8367 0.0 123.0 0.0 1.0 0.0 209.0 30.0 12.0 0.5922 0.3036 0.5085 208.6963 29.4914 209. 29.9 0.602 0.3686 0.4759 12.5748 12.5782 0 0 0 0 0 0 0 0 0 0 0 0
10 0 135.0859 48.5993 135.0 48.0 139.0714 46.5365 128.0 312.0 17291.0 15163.0 22.7208 6.4203 0.8366 0.0 128.0 0.0 1.0 0.0 230.0 29.0 12.0 0.5283 0.087 -0.521 229.9129 29.521 230. 28.8 0.7299 0.2042 -0.7007 12.6694 12.9677 0 0 0 0 0 0 0 0 0 0 0 0
11 0 815.0999 49.0533 907.5 48.0 919.0615 48.3288 140.0 300.0 114114.0 14716.0 264.2204 7.3496 0.9032 0.0 140.0 0.0 1.0 0.0 251.0 30.0 12.0 0.4705 -0.1396 0.4493 251.1396 29.5506 251. 30.0 0.5892 0.2889 0.5136 13.1801 13.6235 0 0 0 0 0 0 0 0 0 0 0 0
12 0 75.1653 47.5353 75.0 48.0 75.5999 47.0306 127.0 269.0 9546.0 12787.0 8.3494 5.6426 0.8246 0.0 127.0 0.0 1.0 0.0 273.0 30.0 12.0 0.6473 0.493 0.4195 272.5069 29.5804 273. 29.6 0.8095 0.808 0.0494 12.4899 13.07 0 0 0 0 0 0 0 0 0 0 0 0
13 0 71.5999 47.7593 71.0 47.0 70.5862 46.5454 125.0 295.0 8950.0 14089.0 7.9397 5.6237 0.8116 0.0 125.0 0.0 1.0 0.0 294.0 29.0 12.0 0.8661 0.6152 -0.6096 293.3847 29.6096 293. 29.1 0.4947 0.1432 -0.4736 12.6422 12.74 0 0 0 0 0 0 0 0 0 0 0 0
14 0 72.9327 47.5819 73.0 47.0 75.2727 47.5546 119.0 299.0 8679.0 14227.0 8.4641 5.9621 0.7828 0.0 119.0 0.0 1.0 0.0 314.0 29.0 12.0 0.639 0.0302 -0.6383 313.9697 29.6383 314. 28.8 0.8112 0.0891 -0.8063 12.2878 12.4997 0 0 0 0 0 0 0 0 0 0 0 0
15 0 76.8991 46.623 77.0 46.0 83.4193 44.9572 119.0 321.0 9151.0 14966.0 8.5841 5.4776 0.7727 0.0 119.0 0.0 1.0 0.0 335.0 30.0 12.0 0.4355 -0.2819 0.3319 335.2819 29.668 335. 29.6 0.0583 0.0205 -0.0545 12.2278 12.4838 0 0 0 0 0 0 0 0 0 0 0 0
16 0 79.2166 46.8875 79.0 47.0 80.8 45.4235 120.0 320.0 9506.0 15004.0 9.6299 5.5119 0.7741 0.0 120.0 0.0 1.0 0.0 357.0 29.0 12.0 0.8877 0.5491 -0.6975 356.4508 29.6975 356. 28.8 0.8163 0.1741 -0.7975 12.1597 12.6806 0 0 0 0 0 0 0 0 0 0 0 0
17 0 66.1428 46.8255 66.0 47.0 66.5555 46.4411 119.0 321.0 7871.0 15031.0 7.7234 5.2162 0.7677 0.0 119.0 0.0 1.0 0.0 378.0 30.0 12.0 0.274 0.0295 0.2724 377.9704 29.7275 378. 29.8 0.3364 0.3068 0.1379 12.139 12.6254 0 0 0 0 0 0 0 0 0 0 0 0
18 0 8212.373 48.4268 10042.0 48.0 10234.5361 47.0725 150.0 246.0 1231856.0 11913.0 4043.9592 7.1169 0.7389 0.0 150.0 0.0 1.0 0.0 399.0 30.0 12.0 0.2552 0.0775 0.2431 398.9224 29.7568 399. 30.2 0.6484 0.3641 0.5365 13.6281 14.1065 0 0 0 0 0 0 0 0 0 0 0 0
19 0 76.7394 47.0996 76.0 47.0 78.5897 45.2702 119.0 301.0 9132.0 14177.0 8.2088 5.515 0.7727 0.0 119.0 0.0 1.0 0.0 421.0 31.0 12.0 1.4817 0.8502 1.2135 420.1497 29.7864 420. 30.8 1.1227 0.3376 1.0707 12.3084 12.4636 0 0 0 0 0 0 0 0 0 0 0 0
20 0 71.161 47.3311 71.0 47.0 70.9729 46.4166 118.0 302.0 8397.0 14294.0 7.2181 5.3173 0.7564 0.0 118.0 0.0 1.0 0.0 441.0 30.0 12.0 0.4782 -0.4414 0.1838 441.4414 29.8161 441. 29.7 0.1278 0.1263 -0.0194 12.2052 12.4388 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5568 Kbytes.




Supplementary file Size Download File type/resource
GSM111778.txt.gz 1.9 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap