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GEO accession:
Sample GSM111779
Query DataSets for GSM111779
Status
Public on Jun 06, 2006
Title
2B3 male D. melanogaster, biological rep3
Sample type
RNA
Source name
2B3 male D. melanogaster
Organism
Drosophila melanogaster
Characteristics
20 pooled adult male individuals
Extracted molecule
total RNA
Label
Cy3
Description
2B3 male D. melanogaster
Data processing
Imagene v6.0 was used to process image and all results from Imagene listed
Submission date
May 30, 2006
Last update date
Jun 06, 2006
Contact name
Lauren M. McIntyre
E-mail(s)
mcintyre@ufl.edu
Phone
(352) 273-8024
Organization name
University of Florida
Department
Dept. of Molecular Genetics and Microbiology
Street address
PO Box 100266; R2-293
City
Gainesville
State/province
FL
ZIP/Postal code
32610-0266
Country
USA
Platform ID
GPL3809
Series (1)
GSE4976
Sex and line specific gene expression and alternative splicing in Drosophila revealed
Data table header descriptions
ID_REF
uniquely identifies each spot
Flag
VALUE
the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
Data table
ID_REF
Flag
VALUE
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
1
0
841.82
24.5799
913.5
24.0
925.1754
24.0108
150.0
250.0
126273.0
6145.0
385.135
3.3388
0.974
0.0
150.0
0.0
1.0
0.0
61.0
54.0
12.0
0.801
0.4995
0.6262
60.5004
53.3737
60.7
53.7
0.4624
0.2328
0.3995
13.805
13.9329
0
0
0
0
0
0
0
0
0
0
0
0
2
2
29.9082
24.5209
30.0
25.0
30.8292
24.0944
109.0
311.0
3260.0
7626.0
3.2665
3.0723
1.0
0.0
109.0
0.0
1.0
0.0
81.0
53.0
12.0
0.6357
-0.5198
-0.3659
81.5198
53.3659
81.0
53.0
0.6357
-0.5198
-0.3659
11.8404
11.8404
0
0
0
0
0
0
0
0
1
0
0
0
3
0
70.2601
24.6593
72.0
24.0
73.1739
23.6599
123.0
317.0
8642.0
7817.0
13.5093
3.5331
0.7987
0.0
123.0
0.0
1.0
0.0
103.0
54.0
12.0
0.6572
0.141
0.6419
102.8589
53.358
102.
53.9
0.6468
-0.1923
0.6175
12.3046
12.837
0
0
0
0
0
0
0
0
0
0
0
0
4
0
155.7698
24.7433
164.0
25.0
170.0416
24.5132
126.0
378.0
19627.0
9353.0
37.2737
3.7317
0.8129
0.0
126.0
0.0
1.0
0.0
123.5
52.5
11.0
0.923
-0.3595
-0.8502
123.8595
53.3502
123.
52.9
0.5916
-0.415
-0.4216
12.4932
12.9337
0
0
0
0
0
0
0
0
0
0
0
0
5
0
185.242
25.675
75.0
25.0
80.6153
24.886
157.0
277.0
29083.0
7112.0
402.4357
5.5598
0.7772
6.0
163.0
1624.0
1.0
0.0
149.0
54.0
10.0
3.57
3.5089
0.6578
145.491
53.3421
145.
53.9
0.6682
-0.3509
0.5686
14.1213
14.5491
0
0
0
0
0
0
0
0
0
0
0
0
6
0
37.3047
24.8778
37.0
25.0
36.826
24.4965
105.0
311.0
3917.0
7737.0
5.1807
3.3953
0.9196
0.0
105.0
0.0
1.0
0.0
165.5
52.5
11.0
1.1258
-0.7558
-0.8344
166.2558
53.3344
165.
52.3
1.0758
-0.3415
-1.0201
11.3989
11.8893
0
0
0
0
0
0
0
0
0
0
0
0
7
0
507.7386
25.0946
554.0
25.0
568.52
23.5572
176.0
264.0
89362.0
6625.0
199.8523
3.7862
0.8888
0.0
176.0
0.0
1.0
0.0
187.0
54.0
14.0
1.0694
-0.8307
0.6735
187.8307
53.3264
186.
53.5
0.9224
-0.8932
0.2303
14.5181
15.511
0
0
0
0
0
0
0
0
0
0
0
0
8
0
559.8561
26.2919
616.0
25.0
637.4848
25.3209
146.0
250.0
81739.0
6573.0
184.8063
9.8889
0.7373
0.0
146.0
0.0
1.0
0.0
209.0
53.0
12.0
0.584
0.4893
-0.3187
208.5106
53.3187
208.
53.0
0.297
0.0578
-0.2913
13.1028
14.2671
0
0
0
0
0
0
0
0
0
0
0
0
9
0
96.0336
25.3411
98.0
25.0
98.2045
24.6013
119.0
299.0
11428.0
7577.0
17.0249
3.9168
0.7727
0.0
119.0
0.0
1.0
0.0
230.5
53.5
11.0
0.4555
0.4143
0.1892
230.0856
53.3107
230.
53.4
0.4047
0.3681
0.1682
12.2446
12.445
0
0
0
0
0
0
0
0
0
0
0
0
10
0
178.0625
25.4896
185.0
25.0
186.7586
23.758
128.0
290.0
22792.0
7392.0
39.6172
5.1214
0.8205
0.0
128.0
0.0
1.0
0.0
250.5
52.5
11.0
0.9271
-0.4633
-0.8029
250.9633
53.3029
250.
52.5
1.1165
-0.7758
-0.8029
12.6425
12.9911
0
0
0
0
0
0
0
0
0
0
0
0
11
0
541.4705
26.6478
595.0
25.0
614.9436
24.576
136.0
301.0
73640.0
8021.0
162.0664
8.1159
0.8774
0.0
136.0
0.0
1.0
0.0
272.5
53.5
11.0
0.2259
-0.095
0.205
272.595
53.2949
272.
53.4
0.3088
0.2432
0.1903
12.8238
13.6219
0
0
0
0
0
0
0
0
0
0
0
0
12
0
61.9927
25.0581
62.0
25.0
62.1111
23.9428
138.0
258.0
8555.0
6465.0
10.5291
3.0992
0.9139
0.0
138.0
0.0
1.0
0.0
294.0
53.0
12.0
0.5593
0.48
-0.2871
293.5199
53.2871
293.
53.1
0.4316
0.393
-0.1784
13.0362
13.567
0
0
0
0
0
0
0
0
0
0
0
0
13
0
92.791
25.4183
96.5
25.0
101.2391
24.9011
134.0
306.0
12434.0
7778.0
20.1368
3.7653
0.8589
0.0
134.0
0.0
1.0
0.0
315.0
53.0
12.0
0.301
0.1123
-0.2792
314.8876
53.2792
314.
53.1
0.4003
-0.3876
-0.1001
12.719
13.5279
0
0
0
0
0
0
0
0
0
0
0
0
14
0
906.46
25.2074
889.5
25.0
890.5999
24.244
150.0
270.0
135969.0
6806.0
439.2332
3.4803
0.7462
0.0
150.0
0.0
1.0
0.0
336.0
53.0
12.0
0.3915
0.282
-0.2715
335.7179
53.2715
335.
53.1
0.3825
-0.3512
-0.1515
13.4111
14.3238
0
0
0
0
0
0
0
0
0
0
0
0
15
0
49.7244
25.0102
49.0
25.0
49.5
24.8636
127.0
293.0
6315.0
7328.0
7.9986
2.8756
0.8355
0.0
127.0
0.0
1.0
0.0
356.0
54.0
12.0
1.0682
-0.774
0.7363
356.774
53.2636
356.
53.9
0.8808
-0.5771
0.6654
12.5817
12.9594
0
0
0
0
0
0
0
0
0
0
0
0
16
0
78.496
25.1269
81.0
25.0
81.7727
24.018
125.0
315.0
9812.0
7915.0
15.0814
3.2596
0.8064
0.0
125.0
0.0
1.0
0.0
378.0
53.0
12.0
0.2564
0.0179
-0.2558
377.982
53.2558
377.
53.2
0.3754
-0.374
0.0321
12.3181
13.0122
0
0
0
0
0
0
0
0
0
0
0
0
17
0
48.3801
25.0344
48.0
25.0
47.8285
23.0087
121.0
319.0
5854.0
7986.0
7.7972
3.2688
0.7756
0.0
121.0
0.0
0.9996
0.0
399.0
53.0
12.0
0.4758
-0.4062
-0.2478
399.4062
53.2478
398.
53.4
0.699
-0.6624
0.2232
12.3544
12.6024
0
0
0
0
0
0
0
0
0
0
0
0
18
0
10937.3525
25.3665
13677.5
25.0
15014.6894
24.6099
156.0
281.0
1706227.0
7128.0
5808.6245
5.2595
0.7684
0.0
156.0
0.0
1.0
0.0
420.5
53.5
11.0
0.3503
0.2349
0.2598
420.265
53.2401
420.
53.3
0.2045
0.1708
0.1124
13.9122
14.3539
0
0
0
0
0
0
0
0
0
0
0
0
19
0
49.0
24.6949
49.0
24.0
48.8378
24.017
122.0
318.0
5978.0
7853.0
7.4128
3.158
0.7922
0.0
122.0
0.0
1.0
0.0
442.0
54.0
12.0
0.9058
0.4806
0.7677
441.5193
53.2322
441.
53.8
0.6149
0.1528
0.5956
12.2205
12.8132
0
0
0
0
0
0
0
0
0
0
0
0
20
0
45.8173
24.8707
46.0
25.0
46.7
25.015
115.0
325.0
5269.0
8083.0
6.3705
3.1557
0.7467
0.0
115.0
0.0
1.0
0.0
463.0
53.0
12.0
0.4301
0.367
-0.2243
462.6329
53.2243
462.
53.1
0.1965
0.1844
-0.0678
12.0809
12.2495
0
0
0
0
0
0
0
0
0
0
0
0
Total number of rows:
22575
Table truncated, full table size
5552 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM111779.txt.gz
1.9 Mb
(ftp)
(http)
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