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Sample GSM111779 Query DataSets for GSM111779
Status Public on Jun 06, 2006
Title 2B3 male D. melanogaster, biological rep3
Sample type RNA
 
Source name 2B3 male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy3
 
Description 2B3 male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 841.82 24.5799 913.5 24.0 925.1754 24.0108 150.0 250.0 126273.0 6145.0 385.135 3.3388 0.974 0.0 150.0 0.0 1.0 0.0 61.0 54.0 12.0 0.801 0.4995 0.6262 60.5004 53.3737 60.7 53.7 0.4624 0.2328 0.3995 13.805 13.9329 0 0 0 0 0 0 0 0 0 0 0 0
2 2 29.9082 24.5209 30.0 25.0 30.8292 24.0944 109.0 311.0 3260.0 7626.0 3.2665 3.0723 1.0 0.0 109.0 0.0 1.0 0.0 81.0 53.0 12.0 0.6357 -0.5198 -0.3659 81.5198 53.3659 81.0 53.0 0.6357 -0.5198 -0.3659 11.8404 11.8404 0 0 0 0 0 0 0 0 1 0 0 0
3 0 70.2601 24.6593 72.0 24.0 73.1739 23.6599 123.0 317.0 8642.0 7817.0 13.5093 3.5331 0.7987 0.0 123.0 0.0 1.0 0.0 103.0 54.0 12.0 0.6572 0.141 0.6419 102.8589 53.358 102. 53.9 0.6468 -0.1923 0.6175 12.3046 12.837 0 0 0 0 0 0 0 0 0 0 0 0
4 0 155.7698 24.7433 164.0 25.0 170.0416 24.5132 126.0 378.0 19627.0 9353.0 37.2737 3.7317 0.8129 0.0 126.0 0.0 1.0 0.0 123.5 52.5 11.0 0.923 -0.3595 -0.8502 123.8595 53.3502 123. 52.9 0.5916 -0.415 -0.4216 12.4932 12.9337 0 0 0 0 0 0 0 0 0 0 0 0
5 0 185.242 25.675 75.0 25.0 80.6153 24.886 157.0 277.0 29083.0 7112.0 402.4357 5.5598 0.7772 6.0 163.0 1624.0 1.0 0.0 149.0 54.0 10.0 3.57 3.5089 0.6578 145.491 53.3421 145. 53.9 0.6682 -0.3509 0.5686 14.1213 14.5491 0 0 0 0 0 0 0 0 0 0 0 0
6 0 37.3047 24.8778 37.0 25.0 36.826 24.4965 105.0 311.0 3917.0 7737.0 5.1807 3.3953 0.9196 0.0 105.0 0.0 1.0 0.0 165.5 52.5 11.0 1.1258 -0.7558 -0.8344 166.2558 53.3344 165. 52.3 1.0758 -0.3415 -1.0201 11.3989 11.8893 0 0 0 0 0 0 0 0 0 0 0 0
7 0 507.7386 25.0946 554.0 25.0 568.52 23.5572 176.0 264.0 89362.0 6625.0 199.8523 3.7862 0.8888 0.0 176.0 0.0 1.0 0.0 187.0 54.0 14.0 1.0694 -0.8307 0.6735 187.8307 53.3264 186. 53.5 0.9224 -0.8932 0.2303 14.5181 15.511 0 0 0 0 0 0 0 0 0 0 0 0
8 0 559.8561 26.2919 616.0 25.0 637.4848 25.3209 146.0 250.0 81739.0 6573.0 184.8063 9.8889 0.7373 0.0 146.0 0.0 1.0 0.0 209.0 53.0 12.0 0.584 0.4893 -0.3187 208.5106 53.3187 208. 53.0 0.297 0.0578 -0.2913 13.1028 14.2671 0 0 0 0 0 0 0 0 0 0 0 0
9 0 96.0336 25.3411 98.0 25.0 98.2045 24.6013 119.0 299.0 11428.0 7577.0 17.0249 3.9168 0.7727 0.0 119.0 0.0 1.0 0.0 230.5 53.5 11.0 0.4555 0.4143 0.1892 230.0856 53.3107 230. 53.4 0.4047 0.3681 0.1682 12.2446 12.445 0 0 0 0 0 0 0 0 0 0 0 0
10 0 178.0625 25.4896 185.0 25.0 186.7586 23.758 128.0 290.0 22792.0 7392.0 39.6172 5.1214 0.8205 0.0 128.0 0.0 1.0 0.0 250.5 52.5 11.0 0.9271 -0.4633 -0.8029 250.9633 53.3029 250. 52.5 1.1165 -0.7758 -0.8029 12.6425 12.9911 0 0 0 0 0 0 0 0 0 0 0 0
11 0 541.4705 26.6478 595.0 25.0 614.9436 24.576 136.0 301.0 73640.0 8021.0 162.0664 8.1159 0.8774 0.0 136.0 0.0 1.0 0.0 272.5 53.5 11.0 0.2259 -0.095 0.205 272.595 53.2949 272. 53.4 0.3088 0.2432 0.1903 12.8238 13.6219 0 0 0 0 0 0 0 0 0 0 0 0
12 0 61.9927 25.0581 62.0 25.0 62.1111 23.9428 138.0 258.0 8555.0 6465.0 10.5291 3.0992 0.9139 0.0 138.0 0.0 1.0 0.0 294.0 53.0 12.0 0.5593 0.48 -0.2871 293.5199 53.2871 293. 53.1 0.4316 0.393 -0.1784 13.0362 13.567 0 0 0 0 0 0 0 0 0 0 0 0
13 0 92.791 25.4183 96.5 25.0 101.2391 24.9011 134.0 306.0 12434.0 7778.0 20.1368 3.7653 0.8589 0.0 134.0 0.0 1.0 0.0 315.0 53.0 12.0 0.301 0.1123 -0.2792 314.8876 53.2792 314. 53.1 0.4003 -0.3876 -0.1001 12.719 13.5279 0 0 0 0 0 0 0 0 0 0 0 0
14 0 906.46 25.2074 889.5 25.0 890.5999 24.244 150.0 270.0 135969.0 6806.0 439.2332 3.4803 0.7462 0.0 150.0 0.0 1.0 0.0 336.0 53.0 12.0 0.3915 0.282 -0.2715 335.7179 53.2715 335. 53.1 0.3825 -0.3512 -0.1515 13.4111 14.3238 0 0 0 0 0 0 0 0 0 0 0 0
15 0 49.7244 25.0102 49.0 25.0 49.5 24.8636 127.0 293.0 6315.0 7328.0 7.9986 2.8756 0.8355 0.0 127.0 0.0 1.0 0.0 356.0 54.0 12.0 1.0682 -0.774 0.7363 356.774 53.2636 356. 53.9 0.8808 -0.5771 0.6654 12.5817 12.9594 0 0 0 0 0 0 0 0 0 0 0 0
16 0 78.496 25.1269 81.0 25.0 81.7727 24.018 125.0 315.0 9812.0 7915.0 15.0814 3.2596 0.8064 0.0 125.0 0.0 1.0 0.0 378.0 53.0 12.0 0.2564 0.0179 -0.2558 377.982 53.2558 377. 53.2 0.3754 -0.374 0.0321 12.3181 13.0122 0 0 0 0 0 0 0 0 0 0 0 0
17 0 48.3801 25.0344 48.0 25.0 47.8285 23.0087 121.0 319.0 5854.0 7986.0 7.7972 3.2688 0.7756 0.0 121.0 0.0 0.9996 0.0 399.0 53.0 12.0 0.4758 -0.4062 -0.2478 399.4062 53.2478 398. 53.4 0.699 -0.6624 0.2232 12.3544 12.6024 0 0 0 0 0 0 0 0 0 0 0 0
18 0 10937.3525 25.3665 13677.5 25.0 15014.6894 24.6099 156.0 281.0 1706227.0 7128.0 5808.6245 5.2595 0.7684 0.0 156.0 0.0 1.0 0.0 420.5 53.5 11.0 0.3503 0.2349 0.2598 420.265 53.2401 420. 53.3 0.2045 0.1708 0.1124 13.9122 14.3539 0 0 0 0 0 0 0 0 0 0 0 0
19 0 49.0 24.6949 49.0 24.0 48.8378 24.017 122.0 318.0 5978.0 7853.0 7.4128 3.158 0.7922 0.0 122.0 0.0 1.0 0.0 442.0 54.0 12.0 0.9058 0.4806 0.7677 441.5193 53.2322 441. 53.8 0.6149 0.1528 0.5956 12.2205 12.8132 0 0 0 0 0 0 0 0 0 0 0 0
20 0 45.8173 24.8707 46.0 25.0 46.7 25.015 115.0 325.0 5269.0 8083.0 6.3705 3.1557 0.7467 0.0 115.0 0.0 1.0 0.0 463.0 53.0 12.0 0.4301 0.367 -0.2243 462.6329 53.2243 462. 53.1 0.1965 0.1844 -0.0678 12.0809 12.2495 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5552 Kbytes.




Supplementary file Size Download File type/resource
GSM111779.txt.gz 1.9 Mb (ftp)(http) TXT

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