NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM111780 Query DataSets for GSM111780
Status Public on Jun 06, 2006
Title 2B3 male D. melanogaster, biological rep4
Sample type RNA
 
Source name 2B3 male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description 2B3 male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 76.0172 46.2826 74.0 46.0 74.2619 45.3655 116.0 283.0 8818.0 13098.0 13.1148 5.1792 0.7483 1.0 117.0 116.0 1.0 0.0 26.0 29.0 12.0 0.7041 0.6731 -0.2065 25.3268 29.2065 25.4 29.3 0.184 0.1214 0.1382 11.9926 12.4485 0 0 0 0 0 0 0 0 0 0 0 0
2 0 53.0 47.061 53.0 47.0 53.5675 46.5952 109.0 311.0 5777.0 14636.0 5.021 5.1771 1.0 0.0 109.0 0.0 1.0 0.0 46.0 28.0 12.0 1.3148 -0.506 -1.2135 46.506 29.2135 46.0 28.0 1.3148 -0.506 -1.2135 11.8404 11.8404 0 0 0 0 0 0 0 0 1 0 0 0
3 0 72.2966 47.3717 70.0 47.0 69.7534 46.0 118.0 312.0 8531.0 14780.0 14.3794 5.6797 0.7612 0.0 118.0 0.0 1.0 0.0 67.0 30.0 12.0 1.1994 -0.9117 0.7793 67.9117 29.2206 67.5 30.0 0.8686 -0.327 0.8047 12.0858 12.5953 0 0 0 0 0 0 0 0 0 0 0 0
4 0 101.4774 47.0666 98.0 46.0 99.459 45.4577 111.0 345.0 11264.0 16238.0 25.071 6.0742 0.74 0.0 111.0 0.0 1.0 0.0 88.5 28.5 11.0 0.7794 -0.2796 -0.7275 88.7796 29.2275 88.1 29.0 0.7061 -0.6715 -0.2185 11.7373 12.1637 0 0 0 0 0 0 0 0 0 0 0 0
5 0 96.676 46.9136 89.0 46.0 86.9759 44.2021 142.0 278.0 13728.0 13042.0 46.1704 5.6682 0.7171 20.0 162.0 449.0 1.0 0.0 112.0 29.0 12.0 1.7455 1.7297 -0.2346 110.2702 29.2346 109. 29.9 1.0262 -0.7139 0.7371 12.8451 14.3919 0 0 0 0 0 0 0 0 0 0 0 0
6 0 86.6789 46.8426 69.0 46.0 73.75 45.538 109.0 286.0 9448.0 13397.0 135.9833 6.5542 0.7032 4.0 113.0 136.0 1.0 0.0 130.5 28.5 11.0 0.997 -0.6664 -0.7415 131.1664 29.2415 130. 28.5 0.7205 -0.2581 -0.6727 11.4436 12.3546 0 0 0 0 0 0 0 0 0 0 0 0
7 0 116.9428 46.7137 114.5 46.0 115.5764 45.1913 140.0 283.0 16372.0 13220.0 30.4705 5.4849 0.693 17.0 157.0 210.5 1.0 0.0 152.0 30.0 14.0 1.0106 -0.6759 0.7513 152.6759 29.2486 151. 30.2 1.4187 -1.0259 0.9798 12.3203 14.8042 0 0 0 0 0 0 0 0 0 0 0 0
8 0 149.7777 47.5923 155.5 47.0 166.0249 49.4615 126.0 314.0 18872.0 14944.0 31.4639 6.2281 0.8235 0.0 126.0 0.0 1.0 0.0 174.0 29.0 12.0 0.5729 0.5128 -0.2555 173.4871 29.2555 173. 28.9 0.3823 0.2429 -0.2952 12.268 13.1964 0 0 0 0 0 0 0 0 0 0 0 0
9 0 103.0775 47.3684 98.5 47.0 99.238 49.2773 116.0 304.0 11957.0 14400.0 30.0998 6.0732 0.7532 0.0 116.0 0.0 1.0 0.0 195.0 29.0 12.0 0.2645 0.0316 -0.2626 194.9683 29.2626 195. 29.2 0.1703 0.1609 -0.0557 11.5655 12.8956 0 0 0 0 0 0 0 0 0 0 0 0
10 0 111.0 46.9094 109.5 46.0 111.3493 46.3781 120.0 276.0 13320.0 12947.0 31.3336 5.9535 0.7741 0.0 120.0 0.0 1.0 0.0 215.0 29.0 12.0 0.807 -0.7607 -0.2695 215.7607 29.2695 215. 28.8 0.547 -0.3607 -0.4112 12.1347 12.7278 0 0 0 0 0 0 0 0 0 0 0 0
11 0 406.1839 47.9615 441.0 46.0 448.5499 45.5736 125.0 312.0 50773.0 14964.0 129.3432 8.9341 0.8012 0.0 125.0 0.0 1.0 0.0 237.5 29.5 11.0 0.2437 0.0976 0.2232 237.4023 29.2767 237. 29.1 0.145 0.1176 -0.0847 12.4408 12.8908 0 0 0 0 0 0 0 0 0 0 0 0
12 0 74.471 46.6653 72.0 46.0 71.5473 43.034 121.0 257.0 9011.0 11993.0 20.3636 5.7167 0.8013 0.0 121.0 0.0 1.0 0.0 259.0 29.0 12.0 0.5452 0.4656 -0.2836 258.5343 29.2836 259. 28.8 0.6819 0.4904 -0.4737 11.8042 13.1612 0 0 0 0 0 0 0 0 0 0 0 0
13 0 92.3593 46.7328 87.0 46.0 86.7777 44.7391 128.0 292.0 11822.0 13646.0 22.881 5.3485 0.8366 0.0 128.0 0.0 1.0 0.0 279.0 29.0 12.0 0.753 -0.6947 -0.2906 279.6947 29.2906 279. 29.0 0.5208 -0.4681 -0.2281 12.5131 13.1559 0 0 0 0 0 0 0 0 0 0 0 0
14 0 68.4774 46.7963 66.0 46.0 66.5576 45.9781 111.0 329.0 7601.0 15396.0 12.987 5.3897 0.7115 0.0 111.0 0.0 1.0 0.0 300.0 29.0 12.0 0.7126 -0.6475 -0.2976 300.6475 29.2976 300. 29.3 0.153 -0.152 0.0176 11.6418 12.349 0 0 0 0 0 0 0 0 0 0 0 0
15 0 69.3103 47.0557 67.0 47.0 67.081 45.4285 116.0 323.0 8040.0 15199.0 16.2933 5.4966 0.7435 1.0 117.0 94.0 1.0 0.0 321.0 30.0 12.0 1.0238 -0.7514 0.6953 321.7514 29.3046 321. 30.1 0.9234 -0.3979 0.8333 11.9655 12.6142 0 0 0 0 0 0 0 0 0 0 0 0
16 0 78.5398 46.3858 76.0 46.0 74.7777 45.9147 113.0 324.0 8875.0 15029.0 20.2344 5.7442 0.7337 0.0 113.0 0.0 1.0 0.0 342.5 29.5 11.0 0.4442 -0.4022 0.1883 342.9022 29.3116 342. 29.7 0.6817 -0.5483 0.4052 11.3991 12.9364 0 0 0 0 0 0 0 0 0 0 0 0
17 0 74.6363 47.3391 67.0 46.5 68.0384 46.6595 110.0 286.0 8210.0 13539.0 40.5029 8.0956 0.7284 0.0 110.0 0.0 0.9088 0.0 364.0 30.0 12.0 0.7329 -0.2702 0.6813 364.2702 29.3186 363. 29.8 0.6095 -0.3066 0.5267 11.7513 12.1993 0 0 0 0 0 0 0 0 0 0 0 0
18 0 6444.3217 47.6632 7979.5 47.0 8629.8369 46.1812 146.0 291.0 940871.0 13870.0 3394.6501 6.6335 0.7227 0.0 146.0 0.0 1.0 0.0 385.5 29.5 11.0 0.3847 0.3429 0.1744 385.157 29.3255 385. 29.1 0.1822 0.1238 -0.1338 13.3446 14.0272 0 0 0 0 0 0 0 0 0 0 0 0
19 0 129.244 46.6325 103.0 47.0 97.0747 44.8715 127.0 313.0 16414.0 14596.0 109.2076 5.4016 0.8193 0.0 127.0 0.0 1.0 0.0 407.0 30.0 12.0 0.9682 0.7014 0.6674 406.2985 29.3325 406. 29.8 0.5263 0.1581 0.502 12.5268 13.0154 0 0 0 0 0 0 0 0 0 0 0 0
20 0 67.8558 46.7103 67.0 46.0 68.1388 45.6019 111.0 328.0 7532.0 15321.0 11.3683 5.2444 0.7302 0.0 111.0 0.0 1.0 0.0 428.0 29.0 12.0 0.6388 0.5411 -0.3395 427.4588 29.3395 427. 28.9 0.522 0.3428 -0.3936 11.5619 12.4215 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5593 Kbytes.




Supplementary file Size Download File type/resource
GSM111780.txt.gz 1.9 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap