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Sample GSM111781 Query DataSets for GSM111781
Status Public on Jun 06, 2006
Title Oregon female D. melanogaster, biological rep1
Sample type RNA
 
Source name Oregon female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 140.3008 50.7278 133 50 134.0752 50.0196 123 316 17257 16030 42.5073 12.2921 0.7935 1 124 984 1 0 30 27 12 0.5997 0.3481 0.4884 29.6518 26.5115 29.5 26.6 0.1857 -0.1233 0.1388 12.3432 12.8525 0 0 0 0 0 0 0 0 0 0 0 0
2 0 65.5084 49.633 62.5 50 63.1545 48.8473 118 278 7730 13798 21.3433 6.0829 0.7814 0 118 0 1 0 51 27 12 0.5021 0.2647 0.4267 50.7352 26.5732 51.1 27.0 0.6208 0.4342 0.4436 11.9702 12.7212 0 0 0 0 0 0 0 0 0 0 0 0
3 0 83.875 49.7971 84 49 87 48.4691 120 276 10065 13744 11.1164 5.8818 0.7741 0 120 0 1 0 72 27 12 0.3911 0.1406 0.3649 71.8593 26.635 71.6 27.4 0.803 -0.1843 0.7816 12.1872 12.6466 0 0 0 0 0 0 0 0 0 0 0 0
4 0 128.1048 49.0411 92 49 93.7521 48.8151 124 316 15885 15497 183.2581 5.7902 0.7948 0 124 0 1 0 93 26 12 0.701 -0.0746 -0.697 93.0746 26.697 92.9 26.3 0.3799 -0.1471 -0.3502 12.2554 12.9768 0 0 0 0 0 0 0 0 0 0 0 0
5 0 119.5935 49.9508 114 49 113.8969 48 155 285 18537 14236 32.0587 6.6563 0.7711 0 155 0 1 0 114 27 14 0.2417 -0.001 0.2417 114.001 26.7582 113. 26.9 0.2402 -0.1752 0.1643 13.89 14.3474 0 0 0 0 0 0 0 0 0 0 0 0
6 0 80.9115 49.2523 78 49 78.625 48.427 113 325 9143 16007 16.498 5.1873 0.7337 2 115 133.5 1 0 136 26 12 1.0195 0.6046 -0.8208 135.3953 26.8208 135. 26.3 0.4783 0.2241 -0.4226 11.7199 12.4713 0 0 0 0 0 0 0 0 0 0 0 0
7 0 212.6114 49.3831 217 49 223.2555 48.8809 157 261 33380 12889 56.2378 6.6239 0.7733 0 157 0 1 0 156.5 27.5 13 0.6547 0.2159 0.618 156.284 26.8819 156. 27.3 0.5094 0.0535 0.5066 13.9279 14.4365 0 0 0 0 0 0 0 0 0 0 0 0
8 0 161.7419 50.3542 163 49 162.2315 49.5538 124 271 20056 13646 43.6313 8.7338 0.7948 1 125 140 1 0 178 27 12 0.2249 0.218 0.0552 177.7819 26.9447 177. 27.0 0.1813 -0.1286 0.1277 12.2554 12.9768 0 0 0 0 0 0 0 0 0 0 0 0
9 0 106.2239 49.8825 105 49 104.7966 47.0566 125 315 13278 15713 20.2163 5.8609 0.8064 0 125 0 1 0 199 27 12 0.0291 -0.0283 -0.0069 199.0283 27.0069 199. 27.0 0.3978 0.3956 0.041 12.4253 12.9041 0 0 0 0 0 0 0 0 0 0 0 0
10 0 81.1694 49.7661 79.5 50 83 48.5245 118 278 9578 13835 15.2756 5.9668 0.7564 0 118 0 1 0 220 27 12 0.1998 -0.1876 -0.0688 220.1876 27.0688 219. 26.3 0.7867 -0.3825 -0.6874 12.0415 12.6096 0 0 0 0 0 0 0 0 0 0 0 0
11 0 129.5196 49.7667 123 49 121.5609 48.3709 127 313 16449 15577 73.0604 6.3452 0.8246 0 127 0 1 0 242 27 12 0.5355 0.5192 -0.131 241.4807 27.131 241. 27.2 0.2632 0.22 0.1445 12.364 13.1939 0 0 0 0 0 0 0 0 0 0 0 0
12 0 95.123 48.6466 89.5 48 89.6181 47.9428 130 266 12366 12940 37.7161 5.6571 0.8609 0 130 0 1 0 263 27 12 0.3134 0.2467 -0.1932 262.7532 27.1932 263. 26.9 0.4374 0.3313 -0.2855 12.5824 13.2771 0 0 0 0 0 0 0 0 0 0 0 0
13 0 102.8442 49.4761 90 49 90.6228 47.2929 122 294 12547 14546 72.3045 7.0535 0.8299 4 126 180 1 0 284 27 12 0.374 0.2739 -0.2546 283.726 27.2546 284. 26.9 0.4263 0.3149 -0.2874 12.3852 12.9835 0 0 0 0 0 0 0 0 0 0 0 0
14 0 100.918 49.114 99 49 100.1041 48.4204 122 298 12312 14636 17.1476 5.7714 0.7922 0 122 0 1 0 304 27 12 0.4167 -0.2732 -0.3147 304.2732 27.3147 304. 26.7 0.5804 0.0628 -0.577 12.33 12.7108 0 0 0 0 0 0 0 0 0 0 0 0
15 0 100.9834 49.5461 96 49 97.7066 46.4636 121 271 12219 13427 24.3048 6.2798 0.7806 4 125 282.5 0.9996 0 325 28 12 0.8428 -0.5675 0.623 325.5675 27.3769 325. 27.8 0.5089 0.1348 0.4907 12.0515 13.0147 0 0 0 0 0 0 0 0 0 0 0 0
16 0 105.6393 49.8238 94 49 94.6495 48.7601 122 318 12888 15844 70.9658 10.3273 0.8026 0 122 0 1 0 347 27 12 0.5125 0.2647 -0.4388 346.7352 27.4388 346. 27.0 0.3829 0.1581 -0.3487 12.4749 12.5935 0 0 0 0 0 0 0 0 0 0 0 0
17 0 96.1428 49.3566 84 49 82.6551 46.9449 126 314 12114 15498 70.2748 5.5004 0.84 0 126 0 1 0 368 28 12 0.5829 -0.3029 0.498 368.3029 27.5019 368. 28 0.5045 -0.0807 0.498 12.432 13.0525 0 0 0 0 0 0 0 0 0 0 0 0
18 0 27431.5917 52.272 35310.5 51 37830.2187 48.8333 154 283 4224465 14793 14377.6513 10.7549 0.7623 0 154 0 1 0 389.5 27.5 11 0.2722 0.2647 -0.0631 389.2352 27.5631 389. 27.5 0.0808 0.0504 -0.0631 13.9286 14.1687 0 0 0 0 0 0 0 0 0 0 0 0
19 0 131.4516 49.9358 105 49 109.2017 48.9876 124 296 16300 14781 105.3551 8.1513 0.8051 0 124 0 1 0 411 28 12 0.551 0.4043 0.3743 410.5956 27.6256 410. 28.3 0.7194 -0.0956 0.713 12.5329 12.7005 0 0 0 0 0 0 0 0 0 0 0 0
20 0 129.6016 48.4511 97 48 103.0247 47.9912 123 297 15941 14390 239.6137 5.4629 0.7935 0 123 0 1 0 431 27 12 0.9657 -0.6784 -0.6872 431.6784 27.6872 431. 27.3 0.3935 -0.215 -0.3295 12.3281 12.7972 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5009 Kbytes.




Supplementary file Size Download File type/resource
GSM111781.txt.gz 1.9 Mb (ftp)(http) TXT

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