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Sample GSM111784 Query DataSets for GSM111784
Status Public on Jun 06, 2006
Title Oregon female D. melanogaster, biological rep4
Sample type RNA
 
Source name Oregon female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 1069.1357 27.741 1241.5 25.0 1263.7258 25.2169 162.0 278.0 173200.0 7712.0 539.9543 22.1639 0.6117 0.0 162.0 0.0 0.7826 0.1176 48.0 35.0 12.0 0.6772 0.5782 -0.3524 47.4217 35.3524 46.2 34.9 1.2252 -1.1439 -0.4388 12.8411 17.3865 0 0 0 0 0 0 0 0 0 0 0 0
2 0 33.6534 24.6996 33.0 25.0 34.0857 24.1666 101.0 313.0 3399.0 7731.0 4.4464 3.1009 0.8782 3.0 104.0 88.5 1.0 0.0 68.5 34.5 11.0 0.8726 -0.0627 -0.8704 68.5627 35.3704 68.2 34.4 0.984 -0.2756 -0.9446 11.1264 11.7446 0 0 0 0 0 0 0 0 0 0 0 0
3 0 47.9661 24.5186 47.0 24.0 46.5 23.9833 118.0 322.0 5660.0 7895.0 7.1008 3.3844 0.7662 0.0 118.0 0.0 1.0 0.0 90.0 36.0 12.0 0.6242 0.1254 0.6114 89.8745 35.3885 89.8 36.2 0.8318 -0.0016 0.8318 12.0167 12.6387 0 0 0 0 0 0 0 0 0 0 0 0
4 0 70.5663 25.1096 70.0 25.0 70.0 23.6296 113.0 301.0 7974.0 7558.0 17.377 4.5162 0.7243 4.0 117.0 4284.0 0.8874 0.0 110.5 34.5 11.0 0.9666 -0.3362 -0.9062 110.8362 35.4062 110. 35.1 0.4746 -0.4203 -0.2204 11.613 12.832 0 0 0 0 0 0 0 0 0 0 0 0
5 0 71.4855 24.5576 71.0 24.0 71.4183 23.5347 138.0 269.0 9865.0 6606.0 20.3435 4.2681 0.6731 33.0 171.0 526.5 1.0 0.0 133.0 36.0 14.0 0.8781 0.6632 0.5754 132.3367 35.4245 131. 36.4 1.4307 -0.9599 1.0609 12.2091 14.5908 0 0 0 0 0 0 0 0 0 0 0 0
6 0 43.1965 24.5855 43.0 25.0 45.5333 24.9781 117.0 345.0 5054.0 8482.0 6.0046 2.9031 0.7597 0.0 117.0 0.0 1.0 0.0 152.5 34.5 11.0 1.1876 -0.7229 -0.9422 153.2229 35.4422 152. 34.6 0.9136 -0.4964 -0.767 12.1071 12.4118 0 0 0 0 0 0 0 0 0 0 0 0
7 0 769.4091 24.8505 877.5 24.0 954.7096 24.3529 176.0 261.0 135416.0 6486.0 313.9375 4.2503 0.8756 0.0 176.0 0.0 1.0 0.0 174.5 36.5 13.0 1.0816 -0.299 1.0394 174.799 35.4605 174. 36.3 1.1497 -0.674 0.9314 14.6262 15.4075 0 0 0 0 0 0 0 0 0 0 0 0
8 0 142.4014 24.5049 157.0 24.0 161.5084 24.1666 137.0 303.0 19509.0 7425.0 37.8096 3.3179 0.9072 0.0 137.0 0.0 1.0 0.0 196.0 35.0 12.0 0.6609 0.4563 -0.4781 195.5436 35.4781 195. 35.0 0.5014 0.2373 -0.4416 12.9376 13.5662 0 0 0 0 0 0 0 0 0 0 0 0
9 0 112.2399 25.0375 116.0 25.0 121.7954 24.5633 125.0 293.0 14030.0 7336.0 24.9996 3.8982 0.8116 0.0 125.0 0.0 1.0 0.0 217.5 35.5 11.0 0.4935 0.4935 0.0036 217.0064 35.4963 217. 35.2 0.4242 0.3695 -0.2083 12.2691 13.066 0 0 0 0 0 0 0 0 0 0 0 0
10 0 51.877 24.6418 52.0 24.0 52.0588 24.0055 122.0 296.0 6329.0 7294.0 8.2676 3.6055 0.782 0.0 122.0 0.0 1.0 0.0 237.5 34.5 11.0 1.1054 -0.4399 -1.0141 237.9399 35.5141 237. 34.6 0.9554 -0.4809 -0.8256 12.196 12.8681 0 0 0 0 0 0 0 0 0 0 0 0
11 0 2990.8322 25.434 3771.0 25.0 3919.3291 24.1346 149.0 288.0 445634.0 7325.0 1422.2631 5.9712 0.9802 0.0 149.0 0.0 1.0 0.0 259.5 35.5 11.0 0.0325 0.0029 -0.0324 259.497 35.5324 259. 35.4 0.1264 0.0734 -0.1029 13.7331 13.9086 0 0 0 0 0 0 0 0 0 0 0 0
12 0 69.2671 24.7058 71.0 24.0 71.549 23.6139 131.0 289.0 9074.0 7140.0 13.3409 3.4239 0.8618 0.0 131.0 0.0 1.0 0.0 281.0 35.0 12.0 0.727 0.4751 -0.5502 280.5248 35.5502 281. 34.9 0.8872 0.643 -0.6113 12.9578 12.9775 0 0 0 0 0 0 0 0 0 0 0 0
13 0 47.0157 24.5563 47.0 24.0 49.5 23.9537 127.0 293.0 5971.0 7195.0 6.952 3.0992 0.83 0.0 127.0 0.0 1.0 0.0 301.0 35.0 12.0 1.0034 -0.8269 -0.5683 301.8269 35.5683 301. 35.4 0.3823 -0.3544 -0.1431 12.2125 13.3658 0 0 0 0 0 0 0 0 0 0 0 0
14 0 1285.0261 24.7942 1461.0 25.0 1492.0468 24.5546 153.0 243.0 196609.0 6025.0 596.9179 3.3417 0.7427 0.0 153.0 0.0 1.0 0.0 323.0 36.0 12.0 0.5753 0.3995 0.414 322.6004 35.5859 322. 35.6 0.1437 -0.1429 0.0153 13.905 14.093 0 0 0 0 0 0 0 0 0 0 0 0
15 0 62.9024 25.3525 63.0 25.0 62.7567 25.054 123.0 295.0 7737.0 7479.0 9.1734 3.234 0.7987 0.0 123.0 0.0 1.0 0.0 343.5 36.5 11.0 0.9334 -0.2614 0.896 343.7614 35.6039 343. 36.6 1.0721 -0.3712 1.0058 12.264 12.8571 0 0 0 0 0 0 0 0 0 0 0 0
16 0 78.0078 24.881 81.0 24.0 86.1818 23.8354 127.0 269.0 9907.0 6693.0 16.0189 3.7298 0.83 0.0 127.0 0.0 1.0 0.0 365.0 36.0 12.0 0.3782 0.0126 0.378 364.9873 35.6219 364. 35.8 0.3065 -0.2472 0.1811 12.5438 12.9964 0 0 0 0 0 0 0 0 0 0 0 0
17 0 57.1718 24.4166 58.0 24.0 60.6428 24.0666 128.0 312.0 7318.0 7618.0 10.5483 3.2747 0.8258 0.0 128.0 0.0 1.0 0.0 386.0 36.0 12.0 0.434 -0.2424 0.36 386.2424 35.6399 385. 35.9 0.7104 -0.6486 0.2896 12.4722 13.1629 0 0 0 0 0 0 0 0 0 0 0 0
18 0 42687.9921 26.7137 57763.0 26.0 60547.7617 25.5636 161.0 276.0 6872767.0 7373.0 24347.289 5.7352 0.7892 0.0 161.0 0.0 1.0 0.0 407.5 35.5 11.0 0.3434 0.305 -0.1577 407.1949 35.6577 407. 35.6 0.234 0.2274 -0.0552 14.1151 14.5962 0 0 0 0 0 0 0 0 0 0 0 0
19 0 59.3801 24.8369 60.0 25.0 60.4571 24.5374 121.0 319.0 7185.0 7923.0 8.5977 3.4998 0.7806 0.0 121.0 0.0 1.0 0.0 429.0 36.0 12.0 0.6221 0.531 0.3241 428.4689 35.6758 428. 36.2 0.6378 0.1426 0.6216 12.134 12.7881 0 0 0 0 0 0 0 0 0 0 0 0
20 0 53.1794 24.3488 52.0 24.0 52.3797 24.9527 117.0 301.0 6222.0 7329.0 9.7143 2.8856 0.7647 0.0 117.0 0.0 1.0 0.0 449.5 35.5 11.0 0.1943 -0.0155 -0.1936 449.5155 35.6936 449. 35.4 0.2173 0.0314 -0.215 12.1458 12.3478 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5558 Kbytes.




Supplementary file Size Download File type/resource
GSM111784.txt.gz 1.9 Mb (ftp)(http) TXT

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