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Sample GSM111785 Query DataSets for GSM111785
Status Public on Jun 06, 2006
Title Oregon male D. melanogaster, biological rep1
Sample type RNA
 
Source name Oregon male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 249.25 23.2203 269.5 22.0 276.4777 21.6138 136.0 304.0 33898.0 7059.0 77.571 5.1446 0.8831 0.0 136.0 0.0 1.0 0.0 30.0 27.0 12.0 0.5997 0.3481 0.4884 29.6518 26.5115 29.2 26.7 0.4768 -0.3944 0.2678 12.8524 13.5644 0 0 0 0 0 0 0 0 0 0 0 0
2 0 34.8849 22.8162 33.0 23.0 32.9351 22.4569 113.0 283.0 3942.0 6457.0 12.9797 3.2288 0.7243 0.0 113.0 0.0 1.0 0.0 51.0 27.0 12.0 0.5021 0.2647 0.4267 50.7352 26.5732 51.2 26.5 0.4694 0.4682 -0.0334 11.9572 12.2363 0 0 0 0 0 0 0 0 0 0 0 0
3 0 54.9236 22.6603 55.0 23.0 55.6666 22.5657 131.0 265.0 7195.0 6005.0 11.7613 2.7768 0.8506 0.0 131.0 0.0 1.0 0.0 72.0 27.0 12.0 0.3911 0.1406 0.3649 71.8593 26.635 71.7 26.9 0.3732 -0.1493 0.342 12.8121 13.1125 0 0 0 0 0 0 0 0 0 0 0 0
4 0 117.1007 22.9324 113.0 23.0 114.3846 22.9642 129.0 311.0 15106.0 7132.0 66.1033 2.8788 0.8486 0.0 129.0 0.0 1.0 0.0 93.0 26.0 12.0 0.701 -0.0746 -0.697 93.0746 26.697 93.0 26.2 0.4398 -0.0746 -0.4335 12.8427 12.8859 0 0 0 0 0 0 0 0 0 0 0 0
5 0 81.9756 23.4673 82.0 23.0 84.9333 22.1604 164.0 276.0 13444.0 6477.0 21.0023 3.7507 0.8199 0.0 164.0 0.0 1.0 0.0 114.0 27.0 14.0 0.2417 -0.0010 0.2417 114.001 26.7582 114. 27.0 0.2895 0.1391 0.2539 14.3225 14.7116 0 0 0 0 0 0 0 0 0 0 0 0
6 0 46.9917 22.9937 46.0 23.0 45.625 24.0639 121.0 318.0 5686.0 7312.0 9.6795 3.0529 0.7857 1.0 122.0 85.0 1.0 0.0 136.0 26.0 12.0 1.0195 0.6046 -0.8208 135.3953 26.8208 135. 26.3 0.4983 0.2162 -0.4489 12.1954 12.7657 0 0 0 0 0 0 0 0 0 0 0 0
7 0 212.0243 23.6889 224.0 23.0 228.1927 22.875 164.0 254.0 34772.0 6017.0 50.6594 4.6628 0.8039 0.0 164.0 0.0 1.0 0.0 156.5 27.5 13.0 0.6547 0.2159 0.618 156.284 26.8819 156. 27.3 0.5411 0.2159 0.4961 14.1712 14.8108 0 0 0 0 0 0 0 0 0 0 0 0
8 0 192.7142 22.7695 204.0 22.0 214.6438 22.0357 140.0 256.0 26980.0 5829.0 52.6019 3.3502 0.9271 0.0 140.0 0.0 1.0 0.0 178.0 27.0 12.0 0.2249 0.218 0.0552 177.7819 26.9447 177. 27.0 0.0837 0.0466 0.0694 13.2997 13.4863 0 0 0 0 0 0 0 0 0 0 0 0
9 0 72.3953 22.7041 74.0 23.0 76.5416 23.0615 129.0 311.0 9339.0 7061.0 15.9817 2.9414 0.8322 0.0 129.0 0.0 1.0 0.0 199.0 27.0 12.0 0.0291 -0.0283 -0.0069 199.0283 27.0069 199. 27.0 0.2704 0.2662 0.0473 12.6524 13.0745 0 0 0 0 0 0 0 0 0 0 0 0
10 0 117.6165 23.3041 122.0 23.0 123.3214 22.3533 133.0 263.0 15643.0 6129.0 28.0313 3.9162 0.8525 0.0 133.0 0.0 1.0 0.0 220.0 27.0 12.0 0.1998 -0.1876 -0.0688 220.1876 27.0688 220. 26.6 0.4287 -0.0748 -0.4221 12.9692 13.1603 0 0 0 0 0 0 0 0 0 0 0 0
11 0 398.7357 23.6666 444.0 23.0 447.9529 22.8703 140.0 300.0 55823.0 7100.0 126.3548 5.9342 0.915 0.0 140.0 0.0 1.0 0.0 242.0 27.0 12.0 0.5355 0.5192 -0.131 241.4807 27.131 241. 27.2 0.2641 0.2549 0.0689 13.0536 13.7486 0 0 0 0 0 0 0 0 0 0 0 0
12 0 59.9851 22.7854 59.0 23.0 60.4269 22.8727 135.0 261.0 8098.0 5947.0 18.1034 3.0837 0.8999 0.0 135.0 0.0 1.0 0.0 263.0 27.0 12.0 0.3134 0.2467 -0.1932 262.7532 27.1932 263. 27.0 0.338 0.3134 -0.1266 12.9685 13.3344 0 0 0 0 0 0 0 0 0 0 0 0
13 0 75.2388 23.1573 73.5 23.0 74.0918 23.5646 134.0 286.0 10082.0 6623.0 29.201 3.112 0.8589 0.0 134.0 0.0 1.0 0.0 284.0 27.0 12.0 0.374 0.2739 -0.2546 283.726 27.2546 283. 27.0 0.2187 -0.0618 -0.2098 12.9684 13.2459 0 0 0 0 0 0 0 0 0 0 0 0
14 0 236.6739 23.5283 249.0 23.0 249.5714 23.0606 138.0 282.0 32661.0 6635.0 67.9895 3.9894 0.8961 0.0 138.0 0.0 1.0 0.0 304.0 27.0 12.0 0.4167 -0.2732 -0.3147 304.2732 27.3147 304. 26.8 0.4875 -0.0776 -0.4813 13.0418 13.5555 0 0 0 0 0 0 0 0 0 0 0 0
15 0 65.1128 22.9925 63.5 23.0 63.589 22.5069 124.0 268.0 8074.0 6162.0 13.7701 3.4109 0.8 4.0 128.0 154.5 1.0 0.0 325.0 28.0 12.0 0.8428 -0.5675 0.623 325.5675 27.3769 325. 27.9 0.5378 0.0614 0.5343 12.0913 13.2887 0 0 0 0 0 0 0 0 0 0 0 0
16 0 73.1875 23.1025 69.0 23.0 67.9916 22.4635 128.0 312.0 9368.0 7208.0 45.9406 6.5781 0.8421 0.0 128.0 0.0 1.0 0.0 347.0 27.0 12.0 0.5125 0.2647 -0.4388 346.7352 27.4388 346. 26.9 0.4896 0.0616 -0.4857 12.4966 13.1644 0 0 0 0 0 0 0 0 0 0 0 0
17 0 56.4878 22.9009 56.0 23.0 55.8823 23.0303 123.0 313.0 6948.0 7168.0 12.6634 2.8643 0.8092 4.0 127.0 170.0 0.9194 0.0 368.0 28.0 12.0 0.5829 -0.3029 0.498 368.3029 27.5019 368. 27.9 0.4745 -0.1218 0.4586 12.5758 12.9904 0 0 0 0 0 0 0 0 0 0 0 0
18 0 11036.8583 23.8333 13984.0 23.0 14469.4052 23.0882 155.0 282.0 1710713.0 6721.0 5635.5932 4.5799 0.7711 0.0 155.0 0.0 1.0 0.0 389.5 27.5 11.0 0.2722 0.2647 -0.0631 389.2352 27.5631 389. 27.4 0.111 0.0357 -0.1051 14.0159 14.1653 0 0 0 0 0 0 0 0 0 0 0 0
19 0 76.748 23.5358 69.0 23.0 68.5 23.3085 127.0 293.0 9747.0 6896.0 39.3748 4.4048 0.8246 0.0 127.0 0.0 1.0 0.0 411.0 28.0 12.0 0.551 0.4043 0.3743 410.5956 27.6256 410. 28.3 0.8103 -0.32 0.7444 12.4541 13.0942 0 0 0 0 0 0 0 0 0 0 0 0
20 0 62.2478 23.2107 60.0 23.0 60.1311 22.4437 117.0 299.0 7283.0 6940.0 14.4618 3.1978 0.7597 4.0 121.0 303.5 1.0 0.0 431.0 27.0 12.0 0.9657 -0.6784 -0.6872 431.6784 27.6872 431. 27.6 0.2905 -0.2853 -0.0548 11.9044 12.737 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5552 Kbytes.




Supplementary file Size Download File type/resource
GSM111785.txt.gz 1.9 Mb (ftp)(http) TXT

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