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Sample GSM111787 Query DataSets for GSM111787
Status Public on Jun 06, 2006
Title Oregon male D. melanogaster, biological rep3
Sample type RNA
 
Source name Oregon male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 998.0972 26.582 1215.0 26.0 1275.2602 25.4814 144.0 256.0 143726.0 6805.0 416.9507 8.4048 0.935 0.0 144.0 0.0 1.0 0.0 51.0 32.0 12.0 0.6874 0.6825 0.0813 50.3174 31.9186 50.7 32.3 0.6042 0.4395 0.4146 13.2798 13.9176 0 0 0 0 0 0 0 0 0 0 0 0
2 0 32.819 25.598 33.0 26.0 32.9428 26.4874 105.0 311.0 3446.0 7961.0 3.9298 3.1 0.6818 0.0 105.0 0.0 0.9137 0.0 71.0 31.0 12.0 0.9961 -0.3548 -0.9308 71.3548 31.9308 71.3 30.9 1.0173 -0.0405 -1.0165 10.9514 12.6086 0 0 0 0 0 0 0 0 0 0 0 0
3 0 51.0775 26.2857 50.5 26.0 50.9032 26.0599 116.0 280.0 5925.0 7360.0 6.942 3.1082 0.7483 0.0 116.0 0.0 1.0 0.0 93.0 33.0 12.0 1.1 0.3052 1.0568 92.6947 31.9431 92.6 32.4 0.4974 -0.0309 0.4965 11.9946 12.3998 0 0 0 0 0 0 0 0 0 0 0 0
4 0 79.6554 26.3377 81.0 26.0 81.8679 26.0427 119.0 299.0 9479.0 7875.0 14.3177 3.3054 0.7727 0.0 119.0 0.0 1.0 0.0 113.5 31.5 11.0 0.5027 -0.2132 -0.4552 113.7132 31.9552 113. 31.5 0.4713 -0.2342 -0.409 12.2446 12.445 0 0 0 0 0 0 0 0 0 0 0 0
5 0 74.2133 25.9479 68.0 26.0 67.5815 26.9907 150.0 269.0 11132.0 6980.0 43.621 3.0808 0.7425 21.0 171.0 321.0 0.9736 0.0 136.0 33.0 14.0 1.357 0.8807 1.0323 135.1192 31.9676 134. 32.6 1.064 -0.8192 0.679 13.1944 14.8688 0 0 0 0 0 0 0 0 0 0 0 0
6 0 40.0 26.1682 39.0 26.0 39.2631 26.0185 111.0 309.0 4440.0 8086.0 6.9632 3.1731 0.7161 0.0 111.0 0.0 0.9659 0.0 156.0 31.0 12.0 0.9907 -0.1471 -0.9797 156.1471 31.9797 155. 31.1 0.9478 -0.3723 -0.8716 11.8702 12.1198 0 0 0 0 0 0 0 0 0 0 0 0
7 0 637.2701 26.3319 693.0 26.0 696.1951 26.4122 174.0 244.0 110885.0 6425.0 292.2007 3.7863 0.8656 0.0 174.0 0.0 1.0 0.0 176.5 32.5 13.0 1.127 -1.0061 0.5079 177.5061 31.992 176. 32.2 0.7301 -0.6727 0.2837 14.699 15.1567 0 0 0 0 0 0 0 0 0 0 0 0
8 0 110.6222 26.9195 116.0 26.0 122.0 26.6839 135.0 261.0 14934.0 7026.0 23.3062 5.9844 0.8709 0.0 135.0 0.0 1.0 0.0 198.0 32.0 12.0 0.3263 -0.3263 -0.0041 198.3263 32.0041 198. 31.5 0.4337 0.0069 -0.4337 12.6148 13.7485 0 0 0 0 0 0 0 0 0 0 0 0
9 0 66.7983 26.68 68.0 26.0 67.756 25.6017 119.0 300.0 7949.0 8004.0 11.1004 5.3843 0.7727 0.0 119.0 0.0 1.0 0.0 220.0 32.0 12.0 0.1272 0.1261 -0.0165 219.8738 32.0165 220. 31.9 0.4186 0.4118 -0.0753 11.9791 12.773 0 0 0 0 0 0 0 0 0 0 0 0
10 0 87.6535 25.7955 89.0 25.0 90.4705 24.9097 127.0 313.0 11132.0 8074.0 17.6029 3.4227 0.8246 0.0 127.0 0.0 1.0 0.0 240.0 31.0 12.0 1.3077 -0.8075 -1.0286 240.8075 32.0286 240. 31.2 0.9219 -0.5319 -0.753 12.3853 13.1582 0 0 0 0 0 0 0 0 0 0 0 0
11 0 242.2631 26.0091 270.0 25.0 278.8125 25.248 133.0 327.0 32221.0 8505.0 73.8441 5.0957 0.8636 0.0 133.0 0.0 1.0 0.0 263.0 32.0 12.0 0.4957 0.494 -0.0411 262.5059 32.0411 262. 32.0 0.2091 0.2083 0.019 12.9045 13.2191 0 0 0 0 0 0 0 0 0 0 0 0
12 0 47.8582 25.5 47.0 25.0 46.5161 24.9013 134.0 262.0 6413.0 6681.0 6.4843 3.9197 0.9115 0.0 134.0 0.0 1.0 0.0 284.0 32.0 12.0 0.638 0.6358 -0.0531 283.3641 32.0531 284. 32.0 0.6812 0.6806 -0.0307 12.3991 13.8453 0 0 0 0 0 0 0 0 0 0 0 0
13 0 46.1048 25.4966 46.5 25.0 48.6969 25.9059 124.0 296.0 5717.0 7547.0 6.0665 3.3166 0.8 0.0 124.0 0.0 1.0 0.0 305.0 32.0 12.0 0.2211 0.2111 -0.0655 304.7888 32.0655 304. 31.9 0.3977 -0.3855 -0.0977 12.4184 12.8373 0 0 0 0 0 0 0 0 0 0 0 0
14 0 1136.17 26.0293 1265.0 26.0 1284.6824 25.4751 147.0 273.0 167017.0 7106.0 461.0048 3.6312 0.7313 0.0 147.0 0.0 1.0 0.0 325.0 32.0 12.0 0.577 -0.5718 -0.0775 325.5718 32.0775 325. 32.0 0.2749 -0.2724 -0.0367 13.2901 14.1683 0 0 0 0 0 0 0 0 0 0 0 0
15 0 51.416 25.7306 52.0 26.0 51.95 24.9215 125.0 271.0 6427.0 6973.0 6.7801 2.9804 0.8116 0.0 125.0 0.0 1.0 0.0 346.0 33.0 12.0 1.1282 -0.6665 0.9102 346.6665 32.0897 346. 32.8 0.8013 -0.2344 0.7662 12.4355 12.9033 0 0 0 0 0 0 0 0 0 0 0 0
16 0 62.8174 25.9551 65.0 26.0 66.4324 25.0319 126.0 312.0 7915.0 8098.0 10.8316 3.1221 0.8076 0.0 126.0 0.0 1.0 0.0 368.0 32.0 12.0 0.1235 0.0696 -0.1019 367.9303 32.1019 367. 32.1 0.306 -0.3033 0.0408 12.3479 13.089 0 0 0 0 0 0 0 0 0 0 0 0
17 0 42.1818 25.7987 42.0 26.0 42.2333 26.4255 110.0 308.0 4640.0 7946.0 5.8218 3.428 0.7142 0.0 110.0 0.0 1.0 0.0 388.5 32.5 11.0 0.7781 -0.6758 0.3857 389.1758 32.1142 388. 32.4 0.6024 -0.5303 0.2857 11.5534 12.2531 0 0 0 0 0 0 0 0 0 0 0 0
18 0 9068.6191 26.4468 11691.0 26.0 12294.957 25.2628 155.0 282.0 1405636.0 7458.0 4757.291 5.3745 0.7635 0.0 155.0 0.0 1.0 0.0 410.5 32.5 11.0 0.5336 0.3809 0.3736 410.119 32.1263 410. 32.3 0.3451 0.2745 0.2091 13.9551 14.2195 0 0 0 0 0 0 0 0 0 0 0 0
19 0 44.9237 25.7338 44.0 25.0 48.3846 24.9514 118.0 278.0 5301.0 7154.0 6.1301 3.4129 0.7814 0.0 118.0 0.0 1.0 0.0 432.0 33.0 12.0 1.0704 0.6354 0.8614 431.3645 32.1385 431. 32.9 0.9654 0.4828 0.8359 12.0022 12.6461 0 0 0 0 0 0 0 0 0 0 0 0
20 0 49.1008 25.7227 49.0 25.0 49.5 25.4719 119.0 321.0 5843.0 8257.0 7.4657 3.2084 0.7677 0.0 119.0 0.0 1.0 0.0 453.0 32.0 12.0 0.4274 0.3999 -0.1508 452.6 32.1508 452. 32.3 0.283 0.1982 0.2021 11.9467 12.8109 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5543 Kbytes.




Supplementary file Size Download File type/resource
GSM111787.txt.gz 1.9 Mb (ftp)(http) TXT

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