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Sample GSM111789 Query DataSets for GSM111789
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 12 female D. melanogaster, biological rep2
Sample type RNA
 
Source name Oregon R and 2B3 RIL female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon R and 2B3 RIL female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 2261.2634 25.6883 2437.5 25.0 2449.2878 24.3655 148.0 292.0 334667.0 7501.0 1016.2734 4.1158 0.74 0.0 148.0 0.0 1.0 0.0 40.0 38.0 12.0 0.4497 -0.3144 0.3215 40.3144 37.6784 40.1 38.1 0.4475 -0.1252 0.4296 13.4701 14.0856 0 0 0 0 0 0 0 0 0 0 0 0
2 0 33.9107 25.814 34.0 26.0 34.0975 26.452 112.0 328.0 3798.0 8467.0 3.3315 3.4981 0.7272 0.0 112.0 0.0 0.9746 0.0 62.0 37.0 12.0 0.8973 0.6278 -0.6411 61.3721 37.6411 62.0 37.5 0.7134 0.6993 -0.1411 11.3881 12.6619 0 0 0 0 0 0 0 0 0 0 0 0
3 0 42.5169 26.4316 42.0 26.5 42.3076 28.0202 118.0 278.0 5017.0 7348.0 5.5673 3.1566 0.7662 0.0 118.0 0.0 1.0 0.0 83.0 38.0 12.0 0.6503 0.5156 0.3962 82.4843 37.6037 82.5 37.5 0.0959 0.0919 -0.0274 12.1324 12.5183 0 0 0 0 0 0 0 0 0 0 0 0
4 0 50.9487 25.9592 51.0 26.0 55.2631 26.0 117.0 319.0 5961.0 8281.0 6.9094 3.1004 0.7548 4.0 121.0 117.0 1.0 0.0 104.0 37.0 12.0 0.6579 0.3351 -0.5662 103.6648 37.5662 103. 36.7 0.8692 0.1898 -0.8482 12.0524 12.6355 0 0 0 0 0 0 0 0 0 0 0 0
5 0 49.0653 26.4285 49.0 26.0 49.2954 26.9326 153.0 287.0 7507.0 7585.0 6.1714 3.4682 0.7574 0.0 153.0 0.0 1.0 0.0 125.0 38.0 14.0 0.4819 0.1004 0.4713 124.8995 37.5286 125. 37.5 0.2642 0.2638 0.0138 13.7176 14.3056 0 0 0 0 0 0 0 0 0 0 0 0
6 0 39.421 26.0337 39.0 26.0 39.3157 26.4965 114.0 326.0 4494.0 8487.0 4.6186 3.5904 0.7354 0.0 114.0 0.0 1.0 0.0 146.0 37.0 12.0 0.4917 -0.0231 -0.4912 146.0231 37.4912 146. 36.9 0.6349 0.3277 -0.5438 11.8791 12.3868 0 0 0 0 0 0 0 0 0 0 0 0
7 0 1273.9392 26.4765 1365.0 26.0 1386.4697 27.1034 181.0 256.0 230583.0 6778.0 571.819 3.6367 0.896 0.0 181.0 0.0 1.0 0.0 167.5 37.5 13.0 0.2558 0.2516 0.0463 167.2483 37.4536 167. 37.4 0.0777 0.0776 0.0049 15.1349 15.3271 0 0 0 0 0 0 0 0 0 0 0 0
8 0 158.2836 26.545 169.0 26.0 173.1166 26.584 141.0 255.0 22318.0 6769.0 42.4675 3.9293 0.9038 0.0 141.0 0.0 1.0 0.0 189.0 37.0 12.0 0.8331 0.7216 -0.4163 188.2783 37.4163 188. 37.4 0.4439 0.4379 0.0729 12.9331 13.976 0 0 0 0 0 0 0 0 0 0 0 0
9 0 96.3484 26.5113 100.0 26.0 101.8723 26.0095 132.0 264.0 12718.0 6999.0 21.358 3.1777 0.8627 0.0 132.0 0.0 1.0 0.0 210.0 38.0 12.0 0.725 0.3734 0.6214 209.6265 37.3785 210. 37.7 0.5598 0.4189 0.3714 12.7686 13.2546 0 0 0 0 0 0 0 0 0 0 0 0
10 0 40.9568 25.9537 40.0 25.5 40.5428 24.888 116.0 324.0 4751.0 8409.0 4.9014 3.2223 0.7532 0.0 116.0 0.0 1.0 0.0 231.0 36.0 12.0 1.3625 0.2408 -1.3411 230.7591 37.3411 230. 36.3 1.0153 0.0597 -1.0135 12.0945 12.3376 0 0 0 0 0 0 0 0 0 0 0 0
11 0 57.7416 26.3562 56.0 26.0 56.0 26.0325 120.0 320.0 6929.0 8434.0 14.2638 3.3323 0.7792 0.0 120.0 0.0 1.0 0.0 252.0 38.0 12.0 0.7001 -0.07 0.6966 252.07 37.3033 252. 37.5 0.4318 0.3215 0.2882 12.0608 12.7676 0 0 0 0 0 0 0 0 0 0 0 0
12 0 59.6129 26.5 60.0 26.0 60.4799 24.4181 124.0 254.0 7392.0 6731.0 7.8562 4.2876 0.8157 0.0 124.0 0.0 1.0 0.0 274.0 37.0 12.0 0.5701 0.5045 -0.2654 273.4954 37.2654 273. 37.1 0.4174 0.3997 -0.1202 12.5265 12.7284 0 0 0 0 0 0 0 0 0 0 0 0
13 0 45.2869 26.9733 45.0 27.0 45.2093 25.6299 115.0 263.0 5208.0 7094.0 4.955 3.6473 0.7467 0.0 115.0 0.0 1.0 0.0 294.0 37.0 12.0 0.4287 -0.3628 -0.2284 294.3628 37.2284 294. 36.6 0.5442 -0.1106 -0.5328 11.928 12.3968 0 0 0 0 0 0 0 0 0 0 0 0
14 0 2406.5612 26.421 2644.0 26.0 2750.8361 24.9711 155.0 285.0 373017.0 7530.0 1225.4838 3.3547 0.7711 0.0 155.0 0.0 1.0 0.0 315.0 36.0 12.0 1.205 0.1751 -1.1922 314.8248 37.1922 314. 36.5 0.6573 -0.0958 -0.6503 14.0159 14.1653 0 0 0 0 0 0 0 0 0 0 0 0
15 0 38.525 25.7586 38.0 26.0 38.375 25.0169 120.0 319.0 4623.0 8217.0 4.4571 3.0841 0.7692 0.0 120.0 0.0 1.0 0.0 336.0 37.0 12.0 0.3501 -0.3143 -0.1541 336.3143 37.1541 336. 37.2 0.2145 0.1773 0.1208 12.1845 12.6725 0 0 0 0 0 0 0 0 0 0 0 0
16 0 48.9401 26.3312 49.0 26.0 50.3428 25.44 117.0 320.0 5726.0 8426.0 6.1286 3.3777 0.7548 0.0 117.0 0.0 1.0 0.0 357.5 36.5 11.0 0.6233 0.0902 -0.6168 357.4097 37.1168 357. 36.3 0.7449 0.1372 -0.7322 12.1356 12.3495 0 0 0 0 0 0 0 0 0 0 0 0
17 0 43.4273 26.3188 43.0 26.0 44.2058 25.0731 117.0 323.0 5081.0 8501.0 4.5952 3.1564 0.7597 0.0 117.0 0.0 1.0 0.0 379.0 37.0 12.0 0.1432 0.1195 -0.0787 378.8804 37.0787 378. 37.3 0.3216 -0.1966 0.2545 12.0182 12.5109 0 0 0 0 0 0 0 0 0 0 0 0
18 0 24887.5097 27.7848 33024.0 27.0 34387.0117 25.7426 159.0 237.0 3957114.0 6585.0 13726.33 5.7851 0.7989 0.0 159.0 0.0 1.0 0.0 400.0 38.0 12.0 0.9725 0.1657 0.9583 399.8342 37.0416 400. 37.6 0.6095 0.1846 0.5809 13.9454 14.6204 0 0 0 0 0 0 0 0 0 0 0 0
19 0 47.8728 26.1149 48.0 26.0 48.4062 26.0458 118.0 322.0 5649.0 8409.0 5.9724 3.4849 0.7612 0.0 118.0 0.0 1.0 0.0 421.0 38.0 12.0 1.0202 -0.2201 0.9961 421.2201 37.0038 421. 37.6 0.688 0.2035 0.6572 12.1024 12.5236 0 0 0 0 0 0 0 0 0 0 0 0
20 0 49.4495 26.3625 48.0 26.0 49.18 24.9405 109.0 331.0 5390.0 8726.0 6.6821 3.6602 0.7032 0.0 109.0 0.0 1.0 0.0 442.0 37.0 12.0 0.336 -0.3344 0.0335 442.3344 36.9664 442. 37.1 0.1837 -0.0867 0.162 11.3409 12.3583 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5528 Kbytes.




Supplementary file Size Download File type/resource
GSM111789.txt.gz 1.9 Mb (ftp)(http) TXT

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