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Sample GSM111792 Query DataSets for GSM111792
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 12 male D. melanogaster, biological rep4
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 103.5495 47.6214 96.0 47.5 94.0733 50.1666 111.0 280.0 11494.0 13334.0 84.2986 5.3425 0.7207 5.0 116.0 178.0 0.8717 0.0 29.0 44.0 12.0 0.6678 0.0493 0.666 28.9506 43.3339 29.3 43.5 0.4759 0.4058 0.2486 12.0546 12.2414 0 0 0 0 0 0 0 0 0 0 0 0
2 0 52.3522 48.3272 51.0 48.0 51.6363 48.888 88.0 330.0 4607.0 15948.0 6.1736 5.3769 0.7857 0.0 88.0 0.0 1.0 0.0 49.5 42.5 11.0 1.0187 -0.5924 -0.8287 50.0924 43.3287 49.5 42.5 1.0187 -0.5924 -0.8287 10.6287 10.6287 0 0 0 0 0 0 0 0 1 0 0 0
3 0 76.0782 48.0 75.0 48.0 80.0625 46.3043 115.0 303.0 8749.0 14544.0 9.5381 5.453 0.7419 0.0 115.0 0.0 1.0 0.0 71.5 43.5 11.0 0.1778 0.021 0.1766 71.4789 43.3233 71.5 43.6 0.3019 0.0688 0.294 12.0409 12.2395 0 0 0 0 0 0 0 0 0 0 0 0
4 0 115.4 49.0838 115.0 48.0 116.8799 48.062 110.0 346.0 12694.0 16983.0 18.8429 8.7832 0.7189 4.0 114.0 180.5 0.9572 0.0 92.0 43.0 12.0 0.4994 -0.3849 -0.3181 92.3849 43.3181 92.2 42.9 0.4352 -0.1486 -0.409 11.0798 13.1192 0 0 0 0 0 0 0 0 0 0 0 0
5 0 95.0774 48.1046 90.0 48.0 90.6776 47.2267 142.0 277.0 13501.0 13325.0 32.6718 9.2946 0.7029 21.0 163.0 418.0 0.965 0.0 115.0 44.0 14.0 1.3504 1.1625 0.6872 113.8374 43.3127 113. 43.9 0.835 -0.5628 0.6168 12.765 14.5432 0 0 0 0 0 0 0 0 0 0 0 0
6 0 60.5833 47.8428 60.0 48.0 61.1052 47.5887 108.0 350.0 6543.0 16745.0 7.233 5.3023 0.6967 0.0 108.0 0.0 1.0 0.0 134.5 42.5 11.0 0.852 -0.2718 -0.8075 134.7718 43.3075 134. 42.2 1.0717 -0.3551 -1.0112 11.4815 12.153 0 0 0 0 0 0 0 0 0 0 0 0
7 0 119.8321 48.8439 115.0 47.0 114.1194 46.9655 143.0 282.0 17136.0 13774.0 30.5098 13.8695 0.7114 15.0 158.0 208.0 1.0 0.0 156.0 44.0 14.0 0.7223 -0.1865 0.6978 156.1865 43.3021 155. 43.8 1.0706 -0.9137 0.5579 12.9022 14.4322 0 0 0 0 0 0 0 0 0 0 0 0
8 0 409.1739 47.5503 436.0 47.0 442.0 46.6833 138.0 258.0 56466.0 12268.0 115.0464 6.9135 0.9139 0.0 138.0 0.0 1.0 0.0 177.0 43.0 12.0 0.2981 -0.0265 -0.2969 177.0265 43.2969 177. 42.9 0.351 0.1473 -0.3186 13.0384 13.5582 0 0 0 0 0 0 0 0 0 0 0 0
9 0 86.4957 47.4186 87.0 47.0 89.3548 47.9296 119.0 301.0 10293.0 14273.0 12.3205 5.8296 0.7828 0.0 119.0 0.0 1.0 0.0 199.0 43.0 12.0 0.4859 0.3888 -0.2915 198.6111 43.2915 199. 43.1 0.549 0.5148 -0.1907 12.1953 12.5828 0 0 0 0 0 0 0 0 0 0 0 0
10 0 134.5119 47.9966 136.0 48.0 136.3174 48.2156 125.0 295.0 16814.0 14159.0 25.7065 6.2509 0.8012 0.0 125.0 0.0 1.0 0.0 219.0 42.0 12.0 1.354 -0.4228 -1.2863 219.4228 43.2863 219. 42.4 0.9211 -0.3988 -0.8303 12.2775 13.0433 0 0 0 0 0 0 0 0 0 0 0 0
11 0 112.5887 48.3164 113.0 48.0 121.2571 46.3232 124.0 316.0 13961.0 15268.0 17.5526 5.712 0.8051 0.0 124.0 0.0 1.0 0.0 241.0 43.0 12.0 0.2861 -0.0545 -0.2809 241.0545 43.2809 241. 43.2 0.2764 0.276 -0.0148 12.241 12.9965 0 0 0 0 0 0 0 0 0 0 0 0
12 0 80.065 47.6313 79.0 47.0 78.0526 45.1075 123.0 255.0 9848.0 12146.0 10.4482 5.5219 0.8145 0.0 123.0 0.0 1.0 0.0 263.0 43.0 12.0 0.9935 0.9545 -0.2756 262.0454 43.2756 262. 42.9 0.8195 0.7594 -0.3082 12.2652 12.9198 0 0 0 0 0 0 0 0 0 0 0 0
13 0 64.7873 47.9146 64.0 48.0 63.7272 46.4177 127.0 293.0 8228.0 14039.0 7.2964 5.6232 0.8141 0.0 127.0 0.0 1.0 0.0 283.0 43.0 12.0 0.4038 -0.2999 -0.2703 283.2999 43.2703 283. 42.5 0.6984 -0.0637 -0.6955 12.4729 13.1771 0 0 0 0 0 0 0 0 0 0 0 0
14 0 75.9491 46.8167 68.0 47.0 68.826 48.3265 118.0 322.0 8962.0 15075.0 54.4427 5.192 0.7612 0.0 118.0 0.0 1.0 0.0 304.0 43.0 12.0 0.319 -0.1773 -0.2651 304.1773 43.2651 304. 42.7 0.5332 -0.0757 -0.5278 11.7518 12.9078 0 0 0 0 0 0 0 0 0 0 0 0
15 0 75.9672 47.3364 74.0 47.0 75.0 46.0 122.0 318.0 9268.0 15053.0 9.0263 5.5629 0.7922 0.0 122.0 0.0 1.0 0.0 325.0 44.0 12.0 0.7851 -0.2619 0.7401 325.2619 43.2598 325. 43.7 0.4942 -0.0898 0.486 12.4569 12.6678 0 0 0 0 0 0 0 0 0 0 0 0
16 0 90.3589 47.8884 90.0 47.0 100.5925 45.8584 117.0 278.0 10572.0 13313.0 12.9901 5.9402 0.7597 0.0 117.0 0.0 1.0 0.0 346.0 43.0 12.0 0.4536 -0.3754 -0.2545 346.3754 43.2545 346. 43.3 0.1417 -0.1276 0.0616 11.7221 12.8519 0 0 0 0 0 0 0 0 0 0 0 0
17 0 61.4803 47.7988 61.5 47.0 62.5652 45.6276 102.0 338.0 6271.0 16156.0 6.8352 5.6022 0.6938 0.0 102.0 0.0 0.989 0.0 367.0 43.0 12.0 0.9009 -0.8658 -0.2492 367.8658 43.2492 367. 43.0 0.8794 -0.8462 -0.2394 10.9351 12.1406 0 0 0 0 0 0 0 0 0 0 0 0
18 0 11303.7763 48.7118 13996.0 48.0 14898.4628 47.3933 152.0 288.0 1718174.0 14029.0 6268.225 6.9868 0.7524 0.0 152.0 0.0 1.0 0.0 389.0 43.0 12.0 0.3751 0.2849 -0.2439 388.715 43.2439 389. 43.3 0.5038 0.4954 0.0915 13.7648 14.1588 0 0 0 0 0 0 0 0 0 0 0 0
19 0 70.1545 47.3818 67.0 47.0 66.5568 47.5876 110.0 330.0 7717.0 15636.0 17.0833 5.3614 0.7142 0.0 110.0 0.0 1.0 0.0 410.0 44.0 12.0 0.7686 0.1059 0.7612 409.894 43.2387 410. 43.6 0.8175 0.7241 0.3794 11.8577 12.07 0 0 0 0 0 0 0 0 0 0 0 0
20 0 68.8782 47.7592 68.0 48.0 68.7283 47.4363 115.0 324.0 7921.0 15474.0 12.4824 5.2208 0.7371 0.0 115.0 0.0 1.0 0.0 431.0 43.0 12.0 0.242 -0.0641 -0.2334 431.0641 43.2334 431. 43.0 0.3157 0.2749 -0.1551 11.9871 12.3623 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5577 Kbytes.




Supplementary file Size Download File type/resource
GSM111792.txt.gz 1.9 Mb (ftp)(http) TXT

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