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GEO accession:
Sample GSM111792
Query DataSets for GSM111792
Status
Public on Jun 06, 2006
Title
Oregon R and 2B3 RIL 12 male D. melanogaster, biological rep4
Sample type
RNA
Source name
Oregon R and 2B3 RIL male D. melanogaster
Organism
Drosophila melanogaster
Characteristics
20 pooled adult male individuals
Extracted molecule
total RNA
Label
Cy5
Description
Oregon R and 2B3 RIL male D. melanogaster
Data processing
Imagene v6.0 was used to process image and all results from Imagene listed
Submission date
May 30, 2006
Last update date
Jun 06, 2006
Contact name
Lauren M. McIntyre
E-mail(s)
mcintyre@ufl.edu
Phone
(352) 273-8024
Organization name
University of Florida
Department
Dept. of Molecular Genetics and Microbiology
Street address
PO Box 100266; R2-293
City
Gainesville
State/province
FL
ZIP/Postal code
32610-0266
Country
USA
Platform ID
GPL3809
Series (1)
GSE4976
Sex and line specific gene expression and alternative splicing in Drosophila revealed
Data table header descriptions
ID_REF
uniquely identifies each spot
Flag
VALUE
the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
Data table
ID_REF
Flag
VALUE
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
1
0
103.5495
47.6214
96.0
47.5
94.0733
50.1666
111.0
280.0
11494.0
13334.0
84.2986
5.3425
0.7207
5.0
116.0
178.0
0.8717
0.0
29.0
44.0
12.0
0.6678
0.0493
0.666
28.9506
43.3339
29.3
43.5
0.4759
0.4058
0.2486
12.0546
12.2414
0
0
0
0
0
0
0
0
0
0
0
0
2
0
52.3522
48.3272
51.0
48.0
51.6363
48.888
88.0
330.0
4607.0
15948.0
6.1736
5.3769
0.7857
0.0
88.0
0.0
1.0
0.0
49.5
42.5
11.0
1.0187
-0.5924
-0.8287
50.0924
43.3287
49.5
42.5
1.0187
-0.5924
-0.8287
10.6287
10.6287
0
0
0
0
0
0
0
0
1
0
0
0
3
0
76.0782
48.0
75.0
48.0
80.0625
46.3043
115.0
303.0
8749.0
14544.0
9.5381
5.453
0.7419
0.0
115.0
0.0
1.0
0.0
71.5
43.5
11.0
0.1778
0.021
0.1766
71.4789
43.3233
71.5
43.6
0.3019
0.0688
0.294
12.0409
12.2395
0
0
0
0
0
0
0
0
0
0
0
0
4
0
115.4
49.0838
115.0
48.0
116.8799
48.062
110.0
346.0
12694.0
16983.0
18.8429
8.7832
0.7189
4.0
114.0
180.5
0.9572
0.0
92.0
43.0
12.0
0.4994
-0.3849
-0.3181
92.3849
43.3181
92.2
42.9
0.4352
-0.1486
-0.409
11.0798
13.1192
0
0
0
0
0
0
0
0
0
0
0
0
5
0
95.0774
48.1046
90.0
48.0
90.6776
47.2267
142.0
277.0
13501.0
13325.0
32.6718
9.2946
0.7029
21.0
163.0
418.0
0.965
0.0
115.0
44.0
14.0
1.3504
1.1625
0.6872
113.8374
43.3127
113.
43.9
0.835
-0.5628
0.6168
12.765
14.5432
0
0
0
0
0
0
0
0
0
0
0
0
6
0
60.5833
47.8428
60.0
48.0
61.1052
47.5887
108.0
350.0
6543.0
16745.0
7.233
5.3023
0.6967
0.0
108.0
0.0
1.0
0.0
134.5
42.5
11.0
0.852
-0.2718
-0.8075
134.7718
43.3075
134.
42.2
1.0717
-0.3551
-1.0112
11.4815
12.153
0
0
0
0
0
0
0
0
0
0
0
0
7
0
119.8321
48.8439
115.0
47.0
114.1194
46.9655
143.0
282.0
17136.0
13774.0
30.5098
13.8695
0.7114
15.0
158.0
208.0
1.0
0.0
156.0
44.0
14.0
0.7223
-0.1865
0.6978
156.1865
43.3021
155.
43.8
1.0706
-0.9137
0.5579
12.9022
14.4322
0
0
0
0
0
0
0
0
0
0
0
0
8
0
409.1739
47.5503
436.0
47.0
442.0
46.6833
138.0
258.0
56466.0
12268.0
115.0464
6.9135
0.9139
0.0
138.0
0.0
1.0
0.0
177.0
43.0
12.0
0.2981
-0.0265
-0.2969
177.0265
43.2969
177.
42.9
0.351
0.1473
-0.3186
13.0384
13.5582
0
0
0
0
0
0
0
0
0
0
0
0
9
0
86.4957
47.4186
87.0
47.0
89.3548
47.9296
119.0
301.0
10293.0
14273.0
12.3205
5.8296
0.7828
0.0
119.0
0.0
1.0
0.0
199.0
43.0
12.0
0.4859
0.3888
-0.2915
198.6111
43.2915
199.
43.1
0.549
0.5148
-0.1907
12.1953
12.5828
0
0
0
0
0
0
0
0
0
0
0
0
10
0
134.5119
47.9966
136.0
48.0
136.3174
48.2156
125.0
295.0
16814.0
14159.0
25.7065
6.2509
0.8012
0.0
125.0
0.0
1.0
0.0
219.0
42.0
12.0
1.354
-0.4228
-1.2863
219.4228
43.2863
219.
42.4
0.9211
-0.3988
-0.8303
12.2775
13.0433
0
0
0
0
0
0
0
0
0
0
0
0
11
0
112.5887
48.3164
113.0
48.0
121.2571
46.3232
124.0
316.0
13961.0
15268.0
17.5526
5.712
0.8051
0.0
124.0
0.0
1.0
0.0
241.0
43.0
12.0
0.2861
-0.0545
-0.2809
241.0545
43.2809
241.
43.2
0.2764
0.276
-0.0148
12.241
12.9965
0
0
0
0
0
0
0
0
0
0
0
0
12
0
80.065
47.6313
79.0
47.0
78.0526
45.1075
123.0
255.0
9848.0
12146.0
10.4482
5.5219
0.8145
0.0
123.0
0.0
1.0
0.0
263.0
43.0
12.0
0.9935
0.9545
-0.2756
262.0454
43.2756
262.
42.9
0.8195
0.7594
-0.3082
12.2652
12.9198
0
0
0
0
0
0
0
0
0
0
0
0
13
0
64.7873
47.9146
64.0
48.0
63.7272
46.4177
127.0
293.0
8228.0
14039.0
7.2964
5.6232
0.8141
0.0
127.0
0.0
1.0
0.0
283.0
43.0
12.0
0.4038
-0.2999
-0.2703
283.2999
43.2703
283.
42.5
0.6984
-0.0637
-0.6955
12.4729
13.1771
0
0
0
0
0
0
0
0
0
0
0
0
14
0
75.9491
46.8167
68.0
47.0
68.826
48.3265
118.0
322.0
8962.0
15075.0
54.4427
5.192
0.7612
0.0
118.0
0.0
1.0
0.0
304.0
43.0
12.0
0.319
-0.1773
-0.2651
304.1773
43.2651
304.
42.7
0.5332
-0.0757
-0.5278
11.7518
12.9078
0
0
0
0
0
0
0
0
0
0
0
0
15
0
75.9672
47.3364
74.0
47.0
75.0
46.0
122.0
318.0
9268.0
15053.0
9.0263
5.5629
0.7922
0.0
122.0
0.0
1.0
0.0
325.0
44.0
12.0
0.7851
-0.2619
0.7401
325.2619
43.2598
325.
43.7
0.4942
-0.0898
0.486
12.4569
12.6678
0
0
0
0
0
0
0
0
0
0
0
0
16
0
90.3589
47.8884
90.0
47.0
100.5925
45.8584
117.0
278.0
10572.0
13313.0
12.9901
5.9402
0.7597
0.0
117.0
0.0
1.0
0.0
346.0
43.0
12.0
0.4536
-0.3754
-0.2545
346.3754
43.2545
346.
43.3
0.1417
-0.1276
0.0616
11.7221
12.8519
0
0
0
0
0
0
0
0
0
0
0
0
17
0
61.4803
47.7988
61.5
47.0
62.5652
45.6276
102.0
338.0
6271.0
16156.0
6.8352
5.6022
0.6938
0.0
102.0
0.0
0.989
0.0
367.0
43.0
12.0
0.9009
-0.8658
-0.2492
367.8658
43.2492
367.
43.0
0.8794
-0.8462
-0.2394
10.9351
12.1406
0
0
0
0
0
0
0
0
0
0
0
0
18
0
11303.7763
48.7118
13996.0
48.0
14898.4628
47.3933
152.0
288.0
1718174.0
14029.0
6268.225
6.9868
0.7524
0.0
152.0
0.0
1.0
0.0
389.0
43.0
12.0
0.3751
0.2849
-0.2439
388.715
43.2439
389.
43.3
0.5038
0.4954
0.0915
13.7648
14.1588
0
0
0
0
0
0
0
0
0
0
0
0
19
0
70.1545
47.3818
67.0
47.0
66.5568
47.5876
110.0
330.0
7717.0
15636.0
17.0833
5.3614
0.7142
0.0
110.0
0.0
1.0
0.0
410.0
44.0
12.0
0.7686
0.1059
0.7612
409.894
43.2387
410.
43.6
0.8175
0.7241
0.3794
11.8577
12.07
0
0
0
0
0
0
0
0
0
0
0
0
20
0
68.8782
47.7592
68.0
48.0
68.7283
47.4363
115.0
324.0
7921.0
15474.0
12.4824
5.2208
0.7371
0.0
115.0
0.0
1.0
0.0
431.0
43.0
12.0
0.242
-0.0641
-0.2334
431.0641
43.2334
431.
43.0
0.3157
0.2749
-0.1551
11.9871
12.3623
0
0
0
0
0
0
0
0
0
0
0
0
Total number of rows:
22575
Table truncated, full table size
5577 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM111792.txt.gz
1.9 Mb
(ftp)
(http)
TXT
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