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Sample GSM111800 Query DataSets for GSM111800
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 38 male D. melanogaster, biological rep1
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 984.7342 26.6666 1082.0 26.0 1090.1612 25.8493 143.0 297.0 140817.0 7920.0 337.4439 5.1135 0.9662 0.0 143.0 0.0 1.0 0.0 42.0 34.0 12.0 0.4988 -0.286 -0.4087 42.286 34.4087 42.0 34.0 0.4114 -0.223 -0.3457 13.3789 13.6813 0 0 0 0 0 0 0 0 0 0 0 0
2 0 32.7636 25.9969 33.0 26.0 32.5517 25.0384 110.0 330.0 3604.0 8579.0 3.1389 3.0644 0.7096 0.0 110.0 0.0 1.0 0.0 64.0 34.0 12.0 0.64 0.4967 -0.4037 63.5032 34.4037 63.5 34.1 0.2555 0.0876 -0.24 11.463 12.4555 0 0 0 0 0 0 0 0 0 0 0 0
3 0 50.5284 26.3676 51.0 26.0 50.8181 25.9915 123.0 272.0 6215.0 7172.0 7.1355 2.9388 0.7884 0.0 123.0 0.0 1.0 0.0 85.0 35.0 12.0 0.7624 0.4687 0.6012 84.5312 34.3987 84.5 34.7 0.3373 0.0541 0.3329 12.3432 12.7885 0 0 0 0 0 0 0 0 0 0 0 0
4 0 117.1612 26.4208 121.0 26.0 121.659 25.4932 124.0 316.0 14528.0 8349.0 22.6901 3.875 0.8051 0.0 124.0 0.0 1.0 0.0 106.0 34.0 12.0 0.4829 0.2797 -0.3936 105.7202 34.3936 105. 33.6 0.7167 0.1103 -0.7082 12.2766 12.9554 0 0 0 0 0 0 0 0 0 0 0 0
5 0 65.5679 26.3345 66.0 26.0 65.9661 25.0756 162.0 278.0 10622.0 7321.0 11.8617 3.0733 0.8059 0.0 162.0 0.0 1.0 0.0 127.0 34.0 14.0 0.4437 0.214 -0.3887 126.7859 34.3887 126. 34.4 0.0922 0.0843 0.0372 14.2303 14.5874 0 0 0 0 0 0 0 0 0 0 0 0
6 0 39.5 26.1851 39.0 26.0 40.4888 25.0254 116.0 324.0 4582.0 8484.0 4.6041 3.3226 0.7483 0.0 116.0 0.0 1.0 0.0 148.0 34.0 12.0 0.3836 -0.0033 -0.3836 148.0033 34.3836 148. 34.1 0.3921 0.2984 -0.2543 12.0922 12.344 0 0 0 0 0 0 0 0 0 0 0 0
7 0 586.8372 27.0312 648.0 26.0 655.486 26.4607 172.0 224.0 100936.0 6055.0 190.2094 4.1235 0.86 0.0 172.0 0.0 1.0 0.0 169.0 35.0 14.0 0.6358 -0.135 0.6213 169.135 34.3786 169. 34.5 0.1422 0.0742 0.1213 14.5164 15.1605 0 0 0 0 0 0 0 0 0 0 0 0
8 0 230.1641 26.8358 245.5 26.0 257.1111 25.9261 134.0 262.0 30842.0 7031.0 65.4353 4.135 0.8758 0.0 134.0 0.0 1.0 0.0 191.0 34.0 12.0 0.6832 0.572 -0.3736 190.4279 34.3736 190. 34.1 0.3858 0.3332 -0.1945 12.9807 13.2358 0 0 0 0 0 0 0 0 0 0 0 0
9 0 88.9393 26.3831 92.0 26.0 95.5957 25.5704 132.0 308.0 11740.0 8126.0 18.5373 3.3267 0.8627 0.0 132.0 0.0 1.0 0.0 212.0 34.0 12.0 0.4627 0.2798 -0.3685 211.7201 34.3685 211. 34.2 0.2744 0.2571 -0.0958 12.8749 13.1451 0 0 0 0 0 0 0 0 0 0 0 0
10 0 130.3939 26.724 135.5 26.0 143.1041 25.649 132.0 308.0 17212.0 8231.0 30.3546 3.7811 0.8741 0.0 132.0 0.0 1.0 0.0 233.0 34.0 12.0 0.3889 0.1381 -0.3635 232.8618 34.3635 232. 33.9 0.4092 -0.0133 -0.409 12.9232 13.1049 0 0 0 0 0 0 0 0 0 0 0 0
11 0 808.7034 26.6 936.0 26.0 947.081 25.5759 145.0 295.0 117262.0 7847.0 307.9705 5.0471 0.9294 0.0 145.0 0.0 1.0 0.0 254.0 34.0 12.0 0.3902 -0.1541 -0.3585 254.1541 34.3585 254. 34.1 0.3018 0.232 -0.193 13.384 13.8928 0 0 0 0 0 0 0 0 0 0 0 0
12 0 47.6746 26.3333 47.0 26.0 47.3448 26.0215 126.0 252.0 6007.0 6636.0 6.4547 3.2489 0.8344 0.0 126.0 0.0 1.0 0.0 276.0 34.0 12.0 0.6172 0.506 -0.3534 275.4939 34.3534 275. 34.0 0.4454 0.2996 -0.3296 12.4901 12.9665 0 0 0 0 0 0 0 0 0 0 0 0
13 0 58.9847 26.173 60.0 26.0 60.2903 25.0 131.0 289.0 7727.0 7564.0 11.7401 3.2546 0.8451 0.0 131.0 0.0 1.0 0.0 296.0 34.0 12.0 0.53 -0.3994 -0.3485 296.3994 34.3485 296. 33.9 0.4179 -0.0253 -0.4172 12.8242 13.1154 0 0 0 0 0 0 0 0 0 0 0 0
14 0 989.958 26.6835 1076.0 26.0 1071.2542 25.5928 143.0 297.0 141564.0 7925.0 349.1951 3.6635 0.9662 0.0 143.0 0.0 1.0 0.0 317.0 34.0 12.0 0.345 -0.0315 -0.3436 317.0315 34.3436 317. 33.9 0.4287 -0.0315 -0.4275 13.417 13.6445 0 0 0 0 0 0 0 0 0 0 0 0
15 0 46.9067 26.6499 46.0 26.0 46.4897 26.4362 118.0 320.0 5535.0 8528.0 6.6942 3.5658 0.7662 0.0 118.0 0.0 1.0 0.0 338.0 35.0 12.0 0.7282 -0.3047 0.6614 338.3047 34.3385 338. 34.7 0.3656 -0.025 0.3647 12.1727 12.4615 0 0 0 0 0 0 0 0 0 0 0 0
16 0 58.5882 26.5206 59.0 26.0 62.4444 26.5273 119.0 315.0 6972.0 8354.0 8.2026 3.4126 0.7727 0.0 119.0 0.0 1.0 0.0 360.0 34.0 12.0 0.6869 0.6004 -0.3335 359.3995 34.3335 359. 33.7 0.565 -0.0717 -0.5604 12.1343 12.5947 0 0 0 0 0 0 0 0 0 0 0 0
17 0 42.9272 26.909 43.0 27.0 42.909 25.9687 110.0 286.0 4722.0 7696.0 4.3289 3.5976 0.7142 0.0 110.0 0.0 1.0 0.0 381.0 35.0 12.0 0.6717 0.0159 0.6715 380.984 34.3284 380. 34.7 0.3926 -0.0476 0.3897 11.5204 12.2797 0 0 0 0 0 0 0 0 0 0 0 0
18 0 12331.5488 27.8298 15779.0 27.0 16182.541 26.9854 155.0 241.0 1911390.0 6707.0 6407.5405 5.4369 0.7711 0.0 155.0 0.0 1.0 0.0 402.0 34.0 12.0 0.3253 0.0344 -0.3235 401.9655 34.3235 402. 34.4 0.244 0.2215 0.1022 13.9985 14.1911 0 0 0 0 0 0 0 0 0 0 0 0
19 0 54.3916 26.7312 54.0 26.0 53.8775 26.0718 120.0 320.0 6527.0 8554.0 8.2039 3.737 0.7792 0.0 120.0 0.0 1.0 0.0 423.0 35.0 12.0 0.719 -0.2292 0.6815 423.2292 34.3184 423. 35.1 0.8594 0.0707 0.8565 12.1317 12.7157 0 0 0 0 0 0 0 0 0 0 0 0
20 0 42.8596 26.4846 43.0 26.0 43.2352 25.9743 114.0 326.0 4886.0 8634.0 5.0225 3.0463 0.7354 0.0 114.0 0.0 1.0 0.0 444.0 34.0 12.0 0.4786 -0.3617 -0.3134 444.3617 34.3134 444. 33.8 0.4203 -0.0372 -0.4187 11.7649 12.462 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5536 Kbytes.




Supplementary file Size Download File type/resource
GSM111800.txt.gz 1.9 Mb (ftp)(http) TXT

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