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GEO accession:
Sample GSM111800
Query DataSets for GSM111800
Status
Public on Jun 06, 2006
Title
Oregon R and 2B3 RIL 38 male D. melanogaster, biological rep1
Sample type
RNA
Source name
Oregon R and 2B3 RIL male D. melanogaster
Organism
Drosophila melanogaster
Characteristics
20 pooled adult male individuals
Extracted molecule
total RNA
Label
Cy3
Description
Oregon R and 2B3 RIL male D. melanogaster
Data processing
Imagene v6.0 was used to process image and all results from Imagene listed
Submission date
May 30, 2006
Last update date
Jun 06, 2006
Contact name
Lauren M. McIntyre
E-mail(s)
mcintyre@ufl.edu
Phone
(352) 273-8024
Organization name
University of Florida
Department
Dept. of Molecular Genetics and Microbiology
Street address
PO Box 100266; R2-293
City
Gainesville
State/province
FL
ZIP/Postal code
32610-0266
Country
USA
Platform ID
GPL3809
Series (1)
GSE4976
Sex and line specific gene expression and alternative splicing in Drosophila revealed
Data table header descriptions
ID_REF
uniquely identifies each spot
Flag
VALUE
the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
Data table
ID_REF
Flag
VALUE
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
1
0
984.7342
26.6666
1082.0
26.0
1090.1612
25.8493
143.0
297.0
140817.0
7920.0
337.4439
5.1135
0.9662
0.0
143.0
0.0
1.0
0.0
42.0
34.0
12.0
0.4988
-0.286
-0.4087
42.286
34.4087
42.0
34.0
0.4114
-0.223
-0.3457
13.3789
13.6813
0
0
0
0
0
0
0
0
0
0
0
0
2
0
32.7636
25.9969
33.0
26.0
32.5517
25.0384
110.0
330.0
3604.0
8579.0
3.1389
3.0644
0.7096
0.0
110.0
0.0
1.0
0.0
64.0
34.0
12.0
0.64
0.4967
-0.4037
63.5032
34.4037
63.5
34.1
0.2555
0.0876
-0.24
11.463
12.4555
0
0
0
0
0
0
0
0
0
0
0
0
3
0
50.5284
26.3676
51.0
26.0
50.8181
25.9915
123.0
272.0
6215.0
7172.0
7.1355
2.9388
0.7884
0.0
123.0
0.0
1.0
0.0
85.0
35.0
12.0
0.7624
0.4687
0.6012
84.5312
34.3987
84.5
34.7
0.3373
0.0541
0.3329
12.3432
12.7885
0
0
0
0
0
0
0
0
0
0
0
0
4
0
117.1612
26.4208
121.0
26.0
121.659
25.4932
124.0
316.0
14528.0
8349.0
22.6901
3.875
0.8051
0.0
124.0
0.0
1.0
0.0
106.0
34.0
12.0
0.4829
0.2797
-0.3936
105.7202
34.3936
105.
33.6
0.7167
0.1103
-0.7082
12.2766
12.9554
0
0
0
0
0
0
0
0
0
0
0
0
5
0
65.5679
26.3345
66.0
26.0
65.9661
25.0756
162.0
278.0
10622.0
7321.0
11.8617
3.0733
0.8059
0.0
162.0
0.0
1.0
0.0
127.0
34.0
14.0
0.4437
0.214
-0.3887
126.7859
34.3887
126.
34.4
0.0922
0.0843
0.0372
14.2303
14.5874
0
0
0
0
0
0
0
0
0
0
0
0
6
0
39.5
26.1851
39.0
26.0
40.4888
25.0254
116.0
324.0
4582.0
8484.0
4.6041
3.3226
0.7483
0.0
116.0
0.0
1.0
0.0
148.0
34.0
12.0
0.3836
-0.0033
-0.3836
148.0033
34.3836
148.
34.1
0.3921
0.2984
-0.2543
12.0922
12.344
0
0
0
0
0
0
0
0
0
0
0
0
7
0
586.8372
27.0312
648.0
26.0
655.486
26.4607
172.0
224.0
100936.0
6055.0
190.2094
4.1235
0.86
0.0
172.0
0.0
1.0
0.0
169.0
35.0
14.0
0.6358
-0.135
0.6213
169.135
34.3786
169.
34.5
0.1422
0.0742
0.1213
14.5164
15.1605
0
0
0
0
0
0
0
0
0
0
0
0
8
0
230.1641
26.8358
245.5
26.0
257.1111
25.9261
134.0
262.0
30842.0
7031.0
65.4353
4.135
0.8758
0.0
134.0
0.0
1.0
0.0
191.0
34.0
12.0
0.6832
0.572
-0.3736
190.4279
34.3736
190.
34.1
0.3858
0.3332
-0.1945
12.9807
13.2358
0
0
0
0
0
0
0
0
0
0
0
0
9
0
88.9393
26.3831
92.0
26.0
95.5957
25.5704
132.0
308.0
11740.0
8126.0
18.5373
3.3267
0.8627
0.0
132.0
0.0
1.0
0.0
212.0
34.0
12.0
0.4627
0.2798
-0.3685
211.7201
34.3685
211.
34.2
0.2744
0.2571
-0.0958
12.8749
13.1451
0
0
0
0
0
0
0
0
0
0
0
0
10
0
130.3939
26.724
135.5
26.0
143.1041
25.649
132.0
308.0
17212.0
8231.0
30.3546
3.7811
0.8741
0.0
132.0
0.0
1.0
0.0
233.0
34.0
12.0
0.3889
0.1381
-0.3635
232.8618
34.3635
232.
33.9
0.4092
-0.0133
-0.409
12.9232
13.1049
0
0
0
0
0
0
0
0
0
0
0
0
11
0
808.7034
26.6
936.0
26.0
947.081
25.5759
145.0
295.0
117262.0
7847.0
307.9705
5.0471
0.9294
0.0
145.0
0.0
1.0
0.0
254.0
34.0
12.0
0.3902
-0.1541
-0.3585
254.1541
34.3585
254.
34.1
0.3018
0.232
-0.193
13.384
13.8928
0
0
0
0
0
0
0
0
0
0
0
0
12
0
47.6746
26.3333
47.0
26.0
47.3448
26.0215
126.0
252.0
6007.0
6636.0
6.4547
3.2489
0.8344
0.0
126.0
0.0
1.0
0.0
276.0
34.0
12.0
0.6172
0.506
-0.3534
275.4939
34.3534
275.
34.0
0.4454
0.2996
-0.3296
12.4901
12.9665
0
0
0
0
0
0
0
0
0
0
0
0
13
0
58.9847
26.173
60.0
26.0
60.2903
25.0
131.0
289.0
7727.0
7564.0
11.7401
3.2546
0.8451
0.0
131.0
0.0
1.0
0.0
296.0
34.0
12.0
0.53
-0.3994
-0.3485
296.3994
34.3485
296.
33.9
0.4179
-0.0253
-0.4172
12.8242
13.1154
0
0
0
0
0
0
0
0
0
0
0
0
14
0
989.958
26.6835
1076.0
26.0
1071.2542
25.5928
143.0
297.0
141564.0
7925.0
349.1951
3.6635
0.9662
0.0
143.0
0.0
1.0
0.0
317.0
34.0
12.0
0.345
-0.0315
-0.3436
317.0315
34.3436
317.
33.9
0.4287
-0.0315
-0.4275
13.417
13.6445
0
0
0
0
0
0
0
0
0
0
0
0
15
0
46.9067
26.6499
46.0
26.0
46.4897
26.4362
118.0
320.0
5535.0
8528.0
6.6942
3.5658
0.7662
0.0
118.0
0.0
1.0
0.0
338.0
35.0
12.0
0.7282
-0.3047
0.6614
338.3047
34.3385
338.
34.7
0.3656
-0.025
0.3647
12.1727
12.4615
0
0
0
0
0
0
0
0
0
0
0
0
16
0
58.5882
26.5206
59.0
26.0
62.4444
26.5273
119.0
315.0
6972.0
8354.0
8.2026
3.4126
0.7727
0.0
119.0
0.0
1.0
0.0
360.0
34.0
12.0
0.6869
0.6004
-0.3335
359.3995
34.3335
359.
33.7
0.565
-0.0717
-0.5604
12.1343
12.5947
0
0
0
0
0
0
0
0
0
0
0
0
17
0
42.9272
26.909
43.0
27.0
42.909
25.9687
110.0
286.0
4722.0
7696.0
4.3289
3.5976
0.7142
0.0
110.0
0.0
1.0
0.0
381.0
35.0
12.0
0.6717
0.0159
0.6715
380.984
34.3284
380.
34.7
0.3926
-0.0476
0.3897
11.5204
12.2797
0
0
0
0
0
0
0
0
0
0
0
0
18
0
12331.5488
27.8298
15779.0
27.0
16182.541
26.9854
155.0
241.0
1911390.0
6707.0
6407.5405
5.4369
0.7711
0.0
155.0
0.0
1.0
0.0
402.0
34.0
12.0
0.3253
0.0344
-0.3235
401.9655
34.3235
402.
34.4
0.244
0.2215
0.1022
13.9985
14.1911
0
0
0
0
0
0
0
0
0
0
0
0
19
0
54.3916
26.7312
54.0
26.0
53.8775
26.0718
120.0
320.0
6527.0
8554.0
8.2039
3.737
0.7792
0.0
120.0
0.0
1.0
0.0
423.0
35.0
12.0
0.719
-0.2292
0.6815
423.2292
34.3184
423.
35.1
0.8594
0.0707
0.8565
12.1317
12.7157
0
0
0
0
0
0
0
0
0
0
0
0
20
0
42.8596
26.4846
43.0
26.0
43.2352
25.9743
114.0
326.0
4886.0
8634.0
5.0225
3.0463
0.7354
0.0
114.0
0.0
1.0
0.0
444.0
34.0
12.0
0.4786
-0.3617
-0.3134
444.3617
34.3134
444.
33.8
0.4203
-0.0372
-0.4187
11.7649
12.462
0
0
0
0
0
0
0
0
0
0
0
0
Total number of rows:
22575
Table truncated, full table size
5536 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM111800.txt.gz
1.9 Mb
(ftp)
(http)
TXT
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