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Sample GSM111803 Query DataSets for GSM111803
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 70 female D. melanogaster, biological rep1
Sample type RNA
 
Source name Oregon R and 2B3 RIL female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 81.5128 46.1176 81.0 46.0 80.8709 44.908 117.0 323.0 9537.0 14896.0 9.202 5.4476 0.7548 0.0 117.0 0.0 1.0 0.0 36.875 33.181 12.5 0.5609 0.2083 -0.5208 36.6666 33.7026 36.7 33.5 0.118 0.0342 -0.1129 12.0891 12.4289 0 0 0 0 0 0 0 0 0 0 0 0
2 2 48.2319 45.9047 49.0 46.0 49.7647 45.344 125.0 315.0 6029.0 14460.0 5.7815 5.2599 0.8064 0.0 125.0 0.0 1.0 0.0 58.039 33.320 12.5 0.5557 0.2064 -0.5159 57.8329 33.836 58.0 33.4 0.4862 0.215 -0.436 12.4216 12.905 0 0 0 0 0 0 0 0 1 0 0 0
3 0 56.1951 45.8881 56.0 46.0 56.8139 46.4736 123.0 295.0 6912.0 13537.0 6.4413 4.9654 0.7884 0.0 123.0 0.0 1.0 0.0 79.203 33.458 12.5 0.5504 0.2044 -0.511 78.9991 33.9694 79.1 33.4 0.5321 0.1878 -0.4978 12.4215 12.7091 0 0 0 0 0 0 0 0 0 0 0 0
4 0 69.1315 46.4938 69.5 47.0 70.7142 45.5664 114.0 326.0 7881.0 15157.0 7.7329 5.2142 0.7402 0.0 114.0 0.0 1.0 0.0 100.36 33.596 12.5 0.5452 0.2025 -0.5062 100.1654 34.1027 100. 32.7 1.377 0.0801 -1.3747 11.7627 12.5201 0 0 0 0 0 0 0 0 0 0 0 0
5 0 69.3356 45.6624 68.0 45.0 67.6131 44.5985 146.0 314.0 10123.0 14338.0 18.272 5.4029 0.7227 0.0 146.0 0.0 1.0 0.0 121.53 33.734 12.5 0.5399 0.2005 -0.5013 121.3317 34.2361 120. 33.7 0.6902 -0.4413 -0.5306 13.176 14.2183 0 0 0 0 0 0 0 0 0 0 0 0
6 0 51.7049 45.4685 51.5 45.0 51.7291 43.9469 122.0 318.0 6308.0 14459.0 5.9073 5.4064 0.7922 0.0 122.0 0.0 1.0 0.0 142.69 33.873 12.5 0.5347 0.1986 -0.4964 142.498 34.3695 142. 33.8 0.5641 0.1577 -0.5416 12.273 12.756 0 0 0 0 0 0 0 0 1 0 0 0
7 0 118.3377 46.4532 117.0 46.0 121.7282 46.4146 151.0 289.0 17869.0 13425.0 28.9182 5.8189 0.7512 0.0 151.0 0.0 1.0 0.0 163.86 34.011 12.5 0.5295 0.1966 -0.4916 163.6642 34.5029 163. 34.0 0.5867 -0.4258 -0.4035 13.5439 14.2889 0 0 0 0 0 0 0 0 0 0 0 0
8 0 252.7463 46.2516 270.0 46.0 290.4166 45.0569 138.0 302.0 34879.0 13968.0 65.2932 6.1182 0.9139 0.0 138.0 0.0 1.0 0.0 185.02 34.149 12.5 0.5242 0.1947 -0.4867 184.8305 34.6362 184. 34.1 0.5339 0.0824 -0.5275 12.9883 13.6129 0 0 0 0 0 0 0 0 0 0 0 0
9 0 95.736 45.7111 97.0 45.0 104.9393 46.1735 125.0 315.0 11967.0 14399.0 16.1483 5.3299 0.8064 0.0 125.0 0.0 1.0 0.0 206.18 34.287 12.5 0.519 0.1927 -0.4818 205.9968 34.7696 206. 34.6 0.4792 0.4511 -0.1616 12.5669 12.7786 0 0 0 0 0 0 0 0 0 0 0 0
10 0 61.3274 46.6655 61.0 46.0 61.0909 45.43 113.0 305.0 6930.0 14233.0 6.5303 4.7535 0.7243 0.0 113.0 0.0 1.0 0.0 227.35 34.426 12.5 0.5137 0.1908 -0.477 227.1631 34.903 227. 33.5 1.3311 0.0935 -1.3278 11.8186 12.3518 0 0 0 0 0 0 0 0 0 0 0 0
11 0 388.9925 46.692 423.0 46.0 428.966 45.5054 135.0 302.0 52514.0 14101.0 102.4601 7.0734 0.8881 0.0 135.0 0.0 1.0 0.0 248.51 34.564 12.5 0.5085 0.1888 -0.4721 248.3294 35.0364 248. 34.7 0.6485 0.6039 -0.2364 13.0046 13.3134 0 0 0 0 0 0 0 0 0 0 0 0
12 0 63.0086 45.8584 62.0 46.0 63.6296 44.5865 115.0 325.0 7246.0 14904.0 7.0062 5.2814 0.7467 0.0 115.0 0.0 1.0 0.0 269.68 34.702 12.5 0.5032 0.1869 -0.4672 269.4956 35.1697 270. 34.4 0.9098 0.5912 -0.6915 12.0429 12.3855 0 0 0 0 0 0 0 0 0 0 0 0
13 0 54.6854 45.9523 55.0 46.0 54.387 46.1367 124.0 315.0 6781.0 14475.0 7.068 5.4604 0.8051 1.0 125.0 76.0 1.0 0.0 290.84 34.840 12.5 0.498 0.1849 -0.4624 290.6619 35.3031 290. 34.7 0.5795 0.1445 -0.5612 12.4435 12.83 0 0 0 0 0 0 0 0 1 0 0 0
14 0 66.7699 45.3211 67.0 45.0 68.2857 42.621 113.0 327.0 7545.0 14820.0 8.5889 5.4146 0.7337 0.0 113.0 0.0 1.0 0.0 312.01 34.978 12.5 0.4927 0.183 -0.4575 311.8282 35.4365 311. 34.1 1.3826 -0.3769 -1.3303 11.9271 12.2328 0 0 0 0 0 0 0 0 0 0 0 0
15 0 63.3196 44.8521 63.0 45.0 64.1428 41.3699 122.0 318.0 7725.0 14263.0 7.012 4.8226 0.787 0.0 122.0 0.0 0.9581 0.0 333.17 35.117 12.5 0.4875 0.1811 -0.4526 332.9945 35.5698 332. 34.9 0.7645 -0.4371 -0.6272 12.1905 12.9659 0 0 0 0 0 0 0 0 0 0 0 0
16 0 68.3916 44.9437 68.0 45.0 69.6923 46.5824 120.0 320.0 8207.0 14382.0 7.9532 5.2604 0.7692 0.0 120.0 0.0 1.0 0.0 354.33 35.255 12.5 0.4823 0.1791 -0.4478 354.1607 35.7032 353. 34.4 1.3478 -0.4274 -1.2782 12.1056 12.7628 0 0 0 0 0 0 0 0 0 0 0 0
17 0 62.0256 46.0612 61.0 46.0 61.7272 45.5142 117.0 343.0 7257.0 15799.0 7.5554 5.1297 0.7597 0.0 117.0 0.0 1.0 0.0 375.50 35.393 12.5 0.477 0.1772 -0.4429 375.327 35.8366 375. 35.8 0.1252 0.1174 0.0437 11.8052 12.8188 0 0 0 0 0 0 0 0 0 0 0 0
18 0 18864.7753 48.0112 24080.0 46.5 24978.9765 46.8246 152.0 266.0 2867446.0 12771.0 9405.665 8.9322 0.7676 0.0 152.0 0.0 1.0 0.0 396.66 35.531 12.5 0.4718 0.1752 -0.438 396.4933 35.97 396. 35.9 0.0494 0.0066 -0.0489 13.5945 14.3147 0 0 0 0 0 0 0 0 0 0 0 0
19 0 67.1186 45.9968 67.0 46.0 67.5348 45.3364 118.0 322.0 7920.0 14811.0 7.7647 5.0226 0.7763 0.0 118.0 0.0 0.9749 0.0 417.83 35.670 12.5 0.4665 0.1733 -0.4332 417.6596 36.1033 418. 36.3 0.4188 0.3403 0.244 12.3354 12.4667 0 0 0 0 0 0 0 0 0 0 0 0
20 0 60.5446 45.8597 60.0 46.0 60.641 45.4909 112.0 328.0 6781.0 15042.0 6.862 4.905 0.7368 0.0 112.0 0.0 1.0 0.0 438.99 35.808 12.5 0.4613 0.1713 -0.4283 438.8258 36.2367 439. 35.8 0.4979 0.2455 -0.4331 11.8916 12.2 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5573 Kbytes.




Supplementary file Size Download File type/resource
GSM111803.txt.gz 2.0 Mb (ftp)(http) TXT

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