NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM111806 Query DataSets for GSM111806
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 70 male D. melanogaster, biological rep1
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 518.8285 28.8733 556.5 28.0 565.7413 28.3478 140.0 300.0 72636.0 8662.0 177.9647 4.317 0.9333 0.0 140.0 0.0 1.0 0.0 36.875 33.181 12.5 0.5609 0.2083 -0.5208 36.6666 33.7026 36.8 33.9 0.3404 0.2262 0.2544 13.2951 13.4793 0 0 0 0 0 0 0 0 0 0 0 0
2 2 32.52 28.7968 32.0 29.0 32.0 27.9622 125.0 315.0 4065.0 9071.0 3.4423 3.2954 0.8064 0.0 125.0 0.0 1.0 0.0 58.039 33.320 12.5 0.5557 0.2064 -0.5159 57.8329 33.836 58.0 33.4 0.4862 0.215 -0.436 12.4216 12.905 0 0 0 0 0 0 0 0 1 0 0 0
3 0 58.2764 29.5186 59.0 29.0 58.9714 28.4796 123.0 295.0 7168.0 8708.0 8.4172 3.8203 0.7884 0.0 123.0 0.0 1.0 0.0 79.203 33.458 12.5 0.5504 0.2044 -0.511 78.9991 33.9694 79.1 33.4 0.535 0.1959 -0.4978 12.436 12.7186 0 0 0 0 0 0 0 0 0 0 0 0
4 0 130.0787 29.7539 135.0 30.0 134.7599 29.5037 127.0 313.0 16520.0 9313.0 30.2594 3.8882 0.8141 0.0 127.0 0.0 1.0 0.0 100.36 33.596 12.5 0.5452 0.2025 -0.5062 100.1654 34.1027 100. 32.4 1.6147 0.0235 -1.6146 12.3962 13.1311 0 0 0 0 0 0 0 0 0 0 0 0
5 0 68.4062 29.5066 67.0 29.0 66.6428 29.4149 160.0 300.0 10945.0 8852.0 13.7087 3.5293 0.808 0.0 160.0 0.0 1.0 0.0 121.53 33.734 12.5 0.5399 0.2005 -0.5013 121.3317 34.2361 121. 33.6 0.7119 -0.3317 -0.6299 14.2945 14.351 0 0 0 0 0 0 0 0 0 0 0 0
6 0 38.6721 29.5314 39.0 29.0 40.7999 28.5068 122.0 318.0 4718.0 9391.0 5.9663 3.7856 0.7922 0.0 122.0 0.0 1.0 0.0 142.69 33.873 12.5 0.5347 0.1986 -0.4964 142.498 34.3695 142. 33.8 0.5641 0.1577 -0.5416 12.273 12.756 0 0 0 0 0 0 0 0 0 0 0 0
7 0 305.6494 29.3609 332.5 29.0 343.2753 28.7857 174.0 266.0 53183.0 7810.0 96.2329 4.4727 0.8656 0.0 174.0 0.0 1.0 0.0 163.86 34.011 12.5 0.5295 0.1966 -0.4916 163.6642 34.5029 163. 34.0 0.6425 -0.4459 -0.4626 14.8885 14.9751 0 0 0 0 0 0 0 0 0 0 0 0
8 0 456.7635 28.9623 499.5 29.0 508.887 28.1052 148.0 292.0 67601.0 8457.0 158.218 3.8679 0.74 0.0 148.0 0.0 1.0 0.0 185.02 34.149 12.5 0.5242 0.1947 -0.4867 184.8305 34.6362 185. 34.2 0.3972 0.1694 -0.3592 13.3257 14.2249 0 0 0 0 0 0 0 0 0 0 0 0
9 0 126.875 29.461 130.0 29.0 129.7021 29.3146 128.0 308.0 16240.0 9074.0 31.0141 3.9667 0.8311 4.0 132.0 268.0 0.8699 0.0 206.18 34.287 12.5 0.519 0.1927 -0.4818 205.9968 34.7696 206. 34.4 0.912 0.844 -0.3454 12.6513 13.3821 0 0 0 0 0 0 0 0 0 0 0 0
10 0 133.9375 30.0586 140.0 29.0 142.55 28.9548 128.0 290.0 17144.0 8717.0 25.2619 4.5257 0.8258 0.0 128.0 0.0 1.0 0.0 227.35 34.426 12.5 0.5137 0.1908 -0.477 227.1631 34.903 227. 33.4 1.4342 9.0E-4 -1.4342 12.5001 13.1279 0 0 0 0 0 0 0 0 0 0 0 0
11 0 166.2761 29.0693 174.0 28.0 178.619 27.9551 134.0 303.0 22281.0 8808.0 35.6695 4.963 0.8589 0.0 134.0 0.0 1.0 0.0 248.51 34.564 12.5 0.5085 0.1888 -0.4721 248.3294 35.0364 248. 34.6 0.7281 0.6258 -0.3722 12.9684 13.2459 0 0 0 0 0 0 0 0 0 0 0 0
12 0 51.3385 29.1757 51.0 29.0 50.9756 29.3969 127.0 313.0 6520.0 9132.0 6.6808 3.8714 0.8246 0.0 127.0 0.0 1.0 0.0 269.68 34.702 12.5 0.5032 0.1869 -0.4672 269.4956 35.1697 270. 34.7 0.8533 0.7326 -0.4374 12.3618 13.2306 0 0 0 0 0 0 0 0 0 0 0 0
13 0 52.3199 29.1157 52.0 29.0 56.5 29.4864 125.0 311.0 6540.0 9055.0 6.549 3.5429 0.8064 0.0 125.0 0.0 1.0 0.0 290.84 34.840 12.5 0.498 0.1849 -0.4624 290.6619 35.3031 290. 34.3 0.9709 -0.0859 -0.9671 12.2763 13.1153 0 0 0 0 0 0 0 0 0 0 0 0
14 0 539.0068 29.2135 591.0 29.0 585.7833 28.374 145.0 295.0 78156.0 8618.0 202.2845 5.6776 0.7178 0.0 145.0 0.0 1.0 0.0 312.01 34.978 12.5 0.4927 0.183 -0.4575 311.8282 35.4365 311. 34.1 1.4252 -0.5041 -1.333 13.1956 14.0751 0 0 0 0 0 0 0 0 0 0 0 0
15 0 54.048 28.8761 53.0 29.0 53.5777 28.991 125.0 315.0 6756.0 9096.0 7.8259 3.2728 0.8116 0.0 125.0 0.0 1.0 0.0 333.17 35.117 12.5 0.4875 0.1811 -0.4526 332.9945 35.5698 332. 34.8 0.8417 -0.4584 -0.7058 12.3362 13.0067 0 0 0 0 0 0 0 0 0 0 0 0
16 0 65.4375 28.6506 66.5 29.0 68.1351 28.0467 128.0 312.0 8376.0 8939.0 11.1906 3.504 0.8311 0.0 128.0 0.0 1.0 0.0 354.33 35.255 12.5 0.4823 0.1791 -0.4478 354.1607 35.7032 353. 34.2 1.4369 -0.2545 -1.4142 12.7411 12.9122 0 0 0 0 0 0 0 0 0 0 0 0
17 0 44.8145 29.1428 44.0 29.0 43.7179 28.3424 124.0 336.0 5557.0 9792.0 5.9856 3.7181 0.8211 0.0 124.0 0.0 1.0 0.0 375.50 35.393 12.5 0.477 0.1772 -0.4429 375.327 35.8366 375. 35.9 0.1929 -0.1415 0.1311 12.2865 13.0277 0 0 0 0 0 0 0 0 0 0 0 0
18 0 11682.9042 29.613 14626.0 29.0 15470.5908 28.2551 157.0 261.0 1834216.0 7729.0 5933.8173 4.4065 0.781 0.0 157.0 0.0 1.0 0.0 396.66 35.531 12.5 0.4718 0.1752 -0.438 396.4933 35.97 396. 35.8 0.1798 0.0798 -0.161 14.0702 14.2917 0 0 0 0 0 0 0 0 0 0 0 0
19 0 56.5564 28.7278 57.0 28.5 57.4411 28.066 124.0 316.0 7013.0 9078.0 8.2728 3.7528 0.8 0.0 124.0 0.0 1.0 0.0 417.83 35.670 12.5 0.4665 0.1733 -0.4332 417.6596 36.1033 417. 36.3 0.3901 0.2678 0.2837 12.4107 12.8651 0 0 0 0 0 0 0 0 0 0 0 0
20 0 49.9059 29.1362 50.0 29.0 50.2916 28.5546 117.0 323.0 5839.0 9411.0 6.6229 3.8837 0.7748 0.0 117.0 0.0 1.0 0.0 438.99 35.808 12.5 0.4613 0.1713 -0.4283 438.8258 36.2367 438. 35.8 0.4046 0.1057 -0.3906 11.9546 12.6227 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5549 Kbytes.




Supplementary file Size Download File type/resource
GSM111806.txt.gz 2.0 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap