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Sample GSM111807 Query DataSets for GSM111807
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 70 male D. melanogaster, biological rep2
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 450.6212 48.4192 260.5 48.0 275.9747 47.5852 132.0 260.0 59482.0 12589.0 739.9066 8.4814 0.8571 4.0 136.0 4591.5 0.9403 0.0 27.0 37.0 12.0 0.6038 -0.3871 0.4633 27.3871 36.5366 27.4 36.9 0.4563 0.0834 0.4486 13.147 13.2901 0 0 0 0 0 0 0 0 0 0 0 0
2 0 63.8761 48.0468 63.0 48.0 63.9344 49.3058 113.0 320.0 7218.0 15375.0 8.8708 6.0162 0.7243 6.0 119.0 56.5 1.0 0.0 49.0 36.0 12.0 0.7241 0.4533 -0.5647 48.5466 36.5647 49.4 36.2 0.9279 0.8869 -0.2727 12.0293 12.1697 0 0 0 0 0 0 0 0 0 0 0 0
3 0 273.9212 47.5048 103.0 47.0 144.0504 47.576 127.0 309.0 34788.0 14679.0 684.2526 5.3187 0.8355 4.0 131.0 272.0 1.0 0.0 70.0 37.0 12.0 0.5241 0.33 0.4071 69.6699 36.5928 69.9 36.7 0.3366 0.3063 0.1394 12.4822 13.1197 0 0 0 0 0 0 0 0 0 0 0 0
4 0 438.1417 51.9869 276.5 49.0 304.3709 48.9606 134.0 306.0 58711.0 15908.0 727.8936 53.4539 0.8993 0.0 134.0 0.0 1.0 0.0 91.0 36.0 12.0 0.635 0.1328 -0.6209 90.8671 36.6209 91.0 35.9 0.7088 0.1701 -0.6881 12.5277 13.7053 0 0 0 0 0 0 0 0 0 0 0 0
5 0 219.5502 48.9926 145.0 49.0 137.8088 48.945 169.0 271.0 37104.0 13277.0 235.2969 5.7589 0.845 0.0 169.0 0.0 1.0 0.0 112.0 37.0 14.0 0.3717 0.1223 0.351 111.8776 36.6489 112. 36.7 0.2243 0.2051 0.0907 14.4023 15.0505 0 0 0 0 0 0 0 0 0 0 0 0
6 0 379.4671 54.5088 213.0 50.0 201.4537 49.7086 137.0 283.0 51987.0 15426.0 510.0003 41.4366 0.8838 0.0 137.0 0.0 1.0 0.0 134.0 36.0 12.0 1.0573 0.812 -0.6772 133.1879 36.6772 133. 36.0 0.7448 0.4252 -0.6115 13.0963 13.4246 0 0 0 0 0 0 0 0 0 0 0 0
7 0 317.1552 56.327 218.0 50.0 240.2384 50.4333 161.0 211.0 51062.0 11885.0 419.3541 85.9314 0.805 6.0 167.0 2694.0 1.0 0.0 154.0 37.0 14.0 0.3606 -0.2077 0.2948 154.2077 36.7051 154. 37.0 0.3699 -0.0214 0.3693 13.648 15.243 0 0 0 0 0 0 0 0 0 0 0 0
8 0 1574.5167 49.8056 1656.0 49.0 1740.6511 49.0431 149.0 247.0 234603.0 12302.0 718.8209 6.8844 0.745 0.0 149.0 0.0 1.0 0.0 176.0 37.0 12.0 0.5591 0.4915 0.2665 175.5084 36.7334 175. 36.9 0.313 0.2566 0.1792 13.4382 14.215 0 0 0 0 0 0 0 0 0 0 0 0
9 0 312.4503 49.5249 258.0 49.0 262.4545 48.6524 131.0 301.0 40931.0 14907.0 254.7609 6.8469 0.8562 8.0 139.0 3827.0 0.8503 0.0 197.0 37.0 12.0 0.2598 0.104 0.238 196.8959 36.7619 197. 37.0 0.3976 0.2151 0.3343 12.7034 13.7876 0 0 0 0 0 0 0 0 0 0 0 0
10 0 411.6818 49.421 213.0 49.0 262.3893 49.4189 132.0 304.0 54342.0 15024.0 1722.5043 6.7366 0.8571 4.0 136.0 2845.0 1.0 0.0 218.0 36.0 12.0 0.7913 -0.0463 -0.79 218.0463 36.79 218. 35.8 0.9634 0.1658 -0.9491 12.5191 13.6213 0 0 0 0 0 0 0 0 0 0 0 0
11 0 401.7826 50.5993 318.0 50.0 315.9185 49.4959 138.0 302.0 55446.0 15281.0 708.7668 6.4084 0.9078 0.0 138.0 0.0 1.0 0.0 240.0 37.0 12.0 0.7125 0.689 0.1817 239.3109 36.8182 239. 37.1 0.5913 0.515 0.2904 13.1771 13.4167 0 0 0 0 0 0 0 0 0 0 0 0
12 0 154.7461 51.4809 113.0 51.0 114.5663 47.9879 130.0 262.0 20117.0 13488.0 141.8798 6.0271 0.8387 4.0 134.0 1402.0 0.926 0.0 261.0 37.0 12.0 0.4612 0.4349 0.1534 260.565 36.8465 261. 36.6 0.5276 0.4797 -0.2196 12.9788 13.2423 0 0 0 0 0 0 0 0 0 0 0 0
13 0 652.0612 50.9004 311.0 50.0 448.6069 50.022 147.0 231.0 95853.0 11758.0 2082.9787 6.4816 0.9358 0.0 147.0 0.0 1.0 0.0 282.0 37.0 12.0 0.5619 0.5476 0.1257 281.4523 36.8742 281. 36.4 0.4925 0.2483 -0.4253 13.5506 13.9451 0 0 0 0 0 0 0 0 0 0 0 0
14 0 255.3565 52.9862 132.0 50.0 171.6964 50.8373 115.0 291.0 29366.0 15419.0 670.6682 32.6689 0.7516 14.0 129.0 1411.5 0.8192 0.0 302.0 36.0 12.0 0.9158 -0.1598 -0.9018 302.1598 36.9018 302. 35.8 1.0077 0.0575 -1.0061 11.2474 13.6857 0 0 0 0 0 0 0 0 0 0 0 0
15 0 206.2239 51.2508 138.0 51.0 162.2203 50.0555 125.0 311.0 25778.0 15939.0 282.3101 6.5361 0.8116 4.0 129.0 5030.5 0.8904 0.0 324.0 37.0 12.0 0.5512 0.5467 0.0698 323.4532 36.9301 323. 36.9 0.1008 0.0893 0.0466 12.404 13.3175 0 0 0 0 0 0 0 0 0 0 0 0
16 0 466.0236 50.6084 151.0 50.0 204.7024 49.0 127.0 309.0 59185.0 15638.0 1334.0515 5.8408 0.8246 4.0 131.0 2731.0 1.0 0.0 345.0 36.0 12.0 1.0335 0.3872 -0.9582 344.6127 36.9582 344. 36.1 0.9013 -0.3056 -0.8479 12.5763 13.028 0 0 0 0 0 0 0 0 0 0 0 0
17 0 585.4796 55.4441 256.0 51.0 261.8999 51.4042 123.0 331.0 72014.0 18352.0 874.7408 66.478 0.7987 8.0 131.0 30813.0 0.7983 0.0 366.5 37.5 11.0 0.6203 0.3486 0.5131 366.1513 36.9868 366. 37.1 0.6184 0.5966 0.1627 12.5761 13.2231 0 0 0 0 0 0 0 0 0 0 0 0
18 0 15678.2285 53.0699 19445.0 51.0 20276.7402 51.8972 153.0 243.0 2398769.0 12896.0 7973.0966 9.6796 0.7536 0.0 153.0 0.0 1.0 0.0 387.0 37.0 12.0 0.0671 -0.0655 -0.0146 387.0655 37.0146 387. 37.3 0.4628 0.2677 0.3775 13.7533 14.2404 0 0 0 0 0 0 0 0 0 0 0 0
19 0 1034.1142 50.1385 483.0 50.0 515.2459 50.2318 140.0 296.0 144776.0 14841.0 1853.9598 5.7095 0.8974 4.0 144.0 18549.5 0.9087 0.0 408.0 38.0 12.0 1.0065 -0.3116 0.9571 408.3116 37.0428 408. 38.0 1.0467 0.2369 1.0196 13.1824 14.04 0 0 0 0 0 0 0 0 0 0 0 0
20 0 214.9745 48.722 100.0 48.0 117.2368 48.7528 118.0 313.0 25367.0 15250.0 611.7653 6.6281 0.7564 9.0 127.0 944.5 0.9749 0.0 430.0 37.0 12.0 0.5335 0.5288 -0.071 429.4711 37.071 429. 37.1 0.1213 -0.0898 0.0815 12.0995 12.7189 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5704 Kbytes.




Supplementary file Size Download File type/resource
GSM111807.txt.gz 2.1 Mb (ftp)(http) TXT

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