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Sample GSM111811 Query DataSets for GSM111811
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 78 female D. melanogaster, biological rep3
Sample type RNA
 
Source name Oregon R and 2B3 RIL female D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult female individuals
Extracted molecule total RNA
Label Cy3
 
Description Oregon R and 2B3 RIL female D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 2962.3732 24.8931 3257.5 24.0 3358.7187 23.8061 150.0 290.0 444356.0 7219.0 1347.8272 4.7935 0.75 0.0 150.0 0.0 1.0 0.0 24.0 39.0 12.0 0.062 -0.0607 -0.0127 24.0607 39.0127 24.2 39.0 0.1597 0.1525 0.0472 13.5136 14.2233 0 0 0 0 0 0 0 0 0 0 0 0
2 0 30.6635 24.3153 30.0 24.0 29.8461 23.9531 107.0 333.0 3281.0 8097.0 3.7315 2.9672 0.6948 0.0 107.0 0.0 1.0 0.0 45.0 38.0 12.0 1.004 -0.1371 -0.9946 45.1371 38.9946 44.7 38.1 0.9262 -0.4361 -0.8171 11.4589 12.2024 0 0 0 0 0 0 0 0 0 0 0 0
3 0 63.9917 24.6583 64.0 24.0 66.0681 24.0162 121.0 319.0 7743.0 7866.0 9.2177 3.423 0.7857 0.0 121.0 0.0 1.0 0.0 66.0 40.0 12.0 1.1287 -0.4757 1.0235 66.4757 38.9764 66.4 39.5 0.5609 -0.0129 0.5607 12.3426 12.5559 0 0 0 0 0 0 0 0 0 0 0 0
4 0 127.3307 24.3424 136.0 24.0 138.2799 23.9496 130.0 330.0 16553.0 8033.0 30.4846 3.1672 0.8387 0.0 130.0 0.0 1.0 0.0 87.0 38.0 12.0 1.0427 -0.4107 -0.9584 87.4107 38.9584 86.9 38.4 0.7076 -0.4799 -0.52 12.4217 13.3974 0 0 0 0 0 0 0 0 0 0 0 0
5 0 67.1231 25.1159 68.0 25.0 68.2653 23.5 138.0 250.0 9263.0 6279.0 12.4513 3.1084 0.7005 30.0 168.0 330.5 1.0 0.0 109.5 39.5 13.0 0.7932 0.5618 0.5599 108.9381 38.94 107. 39.4 1.0836 -0.9526 0.5164 12.3379 14.4152 0 0 0 0 0 0 0 0 0 0 0 0
6 0 38.324 24.8044 38.0 24.5 38.6052 23.009 108.0 312.0 4139.0 7739.0 4.4614 3.3632 0.6967 0.0 108.0 0.0 1.0 0.0 129.0 38.0 12.0 1.189 -0.7505 -0.9222 129.7505 38.9222 129. 37.8 1.1239 -0.2782 -1.0889 11.4091 12.2642 0 0 0 0 0 0 0 0 0 0 0 0
7 0 1638.5057 25.0684 1872.0 24.0 1889.5 23.0616 174.0 263.0 285100.0 6593.0 785.0523 4.0145 0.8613 0.0 174.0 0.0 1.0 0.0 150.5 39.5 13.0 0.9576 -0.7494 0.5961 151.2494 38.9038 150. 39.2 0.8267 -0.7494 0.349 14.7 15.16 0 0 0 0 0 0 0 0 0 0 0 0
8 0 217.4125 25.5059 233.0 24.0 242.2372 23.9957 143.0 253.0 31090.0 6453.0 67.9713 8.4341 0.9225 0.0 143.0 0.0 1.0 0.0 172.0 39.0 12.0 0.1344 -0.0713 0.1139 172.0713 38.886 172. 38.6 0.3234 0.1873 -0.2636 13.1832 13.919 0 0 0 0 0 0 0 0 0 0 0 0
9 0 122.5967 25.3277 129.0 25.0 136.5106 23.6095 124.0 296.0 15202.0 7497.0 28.0068 4.1334 0.8104 0.0 124.0 0.0 1.0 0.0 194.0 39.0 12.0 0.378 0.354 0.1324 193.6459 38.8675 193. 38.8 0.2373 0.233 -0.0449 12.3302 12.92 0 0 0 0 0 0 0 0 0 0 0 0
10 0 194.2374 24.1032 206.0 24.0 209.7555 23.0384 139.0 281.0 26999.0 6773.0 59.8859 3.315 0.9266 0.0 139.0 0.0 1.0 0.0 214.0 38.0 12.0 0.9885 -0.5051 -0.8497 214.5051 38.8497 213. 38.0 0.97 -0.5699 -0.7849 13.1863 13.4919 0 0 0 0 0 0 0 0 0 0 0 0
11 0 84.5 24.7834 88.0 24.0 88.9047 23.6787 126.0 314.0 10647.0 7782.0 15.5873 3.7617 0.8181 0.0 126.0 0.0 1.0 0.0 236.0 39.0 12.0 0.223 -0.1457 0.1688 236.1457 38.8311 236. 38.8 0.0948 0.0923 -0.0216 12.3523 13.0916 0 0 0 0 0 0 0 0 0 0 0 0
12 0 59.6198 25.0116 60.0 24.0 59.9399 24.3902 121.0 257.0 7214.0 6428.0 7.939 3.8558 0.7806 0.0 121.0 0.0 1.0 0.0 258.0 39.0 12.0 0.9288 0.9099 0.1867 257.09 38.8132 257. 38.5 0.5788 0.5214 -0.2512 12.157 12.7584 0 0 0 0 0 0 0 0 0 0 0 0
13 0 57.872 25.3794 59.0 25.0 59.3658 25.4285 125.0 253.0 7234.0 6421.0 8.692 3.6157 0.8012 0.0 125.0 0.0 1.0 0.0 278.0 39.0 12.0 0.4843 -0.4388 0.205 278.4388 38.7949 278. 38.6 0.358 -0.3188 -0.1629 12.2103 13.1274 0 0 0 0 0 0 0 0 0 0 0 0
14 0 3295.6496 25.007 3651.0 25.0 3682.644 24.4759 157.0 283.0 517417.0 7077.0 1755.9842 4.0717 0.7929 0.0 157.0 0.0 1.0 0.0 299.0 38.0 12.0 0.7987 -0.1841 -0.7772 299.1841 38.7772 298. 38.5 0.4155 -0.3178 -0.2676 14.1456 14.2197 0 0 0 0 0 0 0 0 0 0 0 0
15 0 46.4621 24.6199 46.0 24.0 47.0851 24.0326 119.0 321.0 5529.0 7903.0 5.8665 3.5632 0.7727 0.0 119.0 0.0 1.0 0.0 320.0 39.0 12.0 0.3819 -0.2964 0.2408 320.2964 38.7591 320. 39.3 0.6223 -0.2712 0.5601 12.1147 12.6333 0 0 0 0 0 0 0 0 0 0 0 0
16 0 84.25 24.4044 86.0 24.0 85.6458 23.6544 124.0 272.0 10447.0 6638.0 15.3505 3.7365 0.7948 0.0 124.0 0.0 1.0 0.0 341.0 39.0 12.0 0.5673 -0.5048 0.2589 341.5048 38.741 341. 38.6 0.3791 -0.3596 -0.12 12.2564 12.9765 0 0 0 0 0 0 0 0 0 0 0 0
17 0 38.313 24.5446 38.0 24.0 37.7999 24.0499 115.0 325.0 4406.0 7977.0 4.8514 2.8847 0.7419 0.0 115.0 0.0 1.0 0.0 362.0 39.0 12.0 0.9421 -0.9004 0.2772 362.9004 38.7227 362. 38.9 0.5096 -0.4482 0.2425 11.8577 12.5214 0 0 0 0 0 0 0 0 0 0 0 0
18 0 13712.1083 29.2168 17172.0 25.0 17705.6953 25.3888 147.0 249.0 2015680.0 7275.0 6397.9614 19.538 0.9545 0.0 147.0 0.0 1.0 0.0 384.0 39.0 12.0 0.3581 0.2027 0.2951 383.7972 38.7048 384. 38.6 0.3058 0.3048 -0.0245 13.4596 13.9951 0 0 0 0 0 0 0 0 0 0 0 0
19 0 46.3008 24.4563 46.0 24.0 46.4054 23.5384 123.0 309.0 5695.0 7557.0 6.5081 3.5774 0.7987 0.0 123.0 0.0 1.0 0.0 405.0 39.0 12.0 0.3133 0.0054 0.3133 404.9945 38.6866 405. 39.2 0.6438 0.3224 0.5572 12.1665 12.9934 0 0 0 0 0 0 0 0 0 0 0 0
20 0 44.8495 24.5508 45.0 24.0 45.7714 23.6645 113.0 305.0 5068.0 7488.0 5.5049 3.4836 0.7243 0.0 113.0 0.0 1.0 0.0 426.5 38.5 11.0 0.3496 0.3063 -0.1685 426.1936 38.6685 426. 38.4 0.268 0.0895 -0.2526 11.9235 12.2113 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5541 Kbytes.




Supplementary file Size Download File type/resource
GSM111811.txt.gz 1.9 Mb (ftp)(http) TXT

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