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GEO accession:
Sample GSM111811
Query DataSets for GSM111811
Status
Public on Jun 06, 2006
Title
Oregon R and 2B3 RIL 78 female D. melanogaster, biological rep3
Sample type
RNA
Source name
Oregon R and 2B3 RIL female D. melanogaster
Organism
Drosophila melanogaster
Characteristics
20 pooled adult female individuals
Extracted molecule
total RNA
Label
Cy3
Description
Oregon R and 2B3 RIL female D. melanogaster
Data processing
Imagene v6.0 was used to process image and all results from Imagene listed
Submission date
May 30, 2006
Last update date
Jun 06, 2006
Contact name
Lauren M. McIntyre
E-mail(s)
mcintyre@ufl.edu
Phone
(352) 273-8024
Organization name
University of Florida
Department
Dept. of Molecular Genetics and Microbiology
Street address
PO Box 100266; R2-293
City
Gainesville
State/province
FL
ZIP/Postal code
32610-0266
Country
USA
Platform ID
GPL3809
Series (1)
GSE4976
Sex and line specific gene expression and alternative splicing in Drosophila revealed
Data table header descriptions
ID_REF
uniquely identifies each spot
Flag
VALUE
the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
Data table
ID_REF
Flag
VALUE
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot
1
0
2962.3732
24.8931
3257.5
24.0
3358.7187
23.8061
150.0
290.0
444356.0
7219.0
1347.8272
4.7935
0.75
0.0
150.0
0.0
1.0
0.0
24.0
39.0
12.0
0.062
-0.0607
-0.0127
24.0607
39.0127
24.2
39.0
0.1597
0.1525
0.0472
13.5136
14.2233
0
0
0
0
0
0
0
0
0
0
0
0
2
0
30.6635
24.3153
30.0
24.0
29.8461
23.9531
107.0
333.0
3281.0
8097.0
3.7315
2.9672
0.6948
0.0
107.0
0.0
1.0
0.0
45.0
38.0
12.0
1.004
-0.1371
-0.9946
45.1371
38.9946
44.7
38.1
0.9262
-0.4361
-0.8171
11.4589
12.2024
0
0
0
0
0
0
0
0
0
0
0
0
3
0
63.9917
24.6583
64.0
24.0
66.0681
24.0162
121.0
319.0
7743.0
7866.0
9.2177
3.423
0.7857
0.0
121.0
0.0
1.0
0.0
66.0
40.0
12.0
1.1287
-0.4757
1.0235
66.4757
38.9764
66.4
39.5
0.5609
-0.0129
0.5607
12.3426
12.5559
0
0
0
0
0
0
0
0
0
0
0
0
4
0
127.3307
24.3424
136.0
24.0
138.2799
23.9496
130.0
330.0
16553.0
8033.0
30.4846
3.1672
0.8387
0.0
130.0
0.0
1.0
0.0
87.0
38.0
12.0
1.0427
-0.4107
-0.9584
87.4107
38.9584
86.9
38.4
0.7076
-0.4799
-0.52
12.4217
13.3974
0
0
0
0
0
0
0
0
0
0
0
0
5
0
67.1231
25.1159
68.0
25.0
68.2653
23.5
138.0
250.0
9263.0
6279.0
12.4513
3.1084
0.7005
30.0
168.0
330.5
1.0
0.0
109.5
39.5
13.0
0.7932
0.5618
0.5599
108.9381
38.94
107.
39.4
1.0836
-0.9526
0.5164
12.3379
14.4152
0
0
0
0
0
0
0
0
0
0
0
0
6
0
38.324
24.8044
38.0
24.5
38.6052
23.009
108.0
312.0
4139.0
7739.0
4.4614
3.3632
0.6967
0.0
108.0
0.0
1.0
0.0
129.0
38.0
12.0
1.189
-0.7505
-0.9222
129.7505
38.9222
129.
37.8
1.1239
-0.2782
-1.0889
11.4091
12.2642
0
0
0
0
0
0
0
0
0
0
0
0
7
0
1638.5057
25.0684
1872.0
24.0
1889.5
23.0616
174.0
263.0
285100.0
6593.0
785.0523
4.0145
0.8613
0.0
174.0
0.0
1.0
0.0
150.5
39.5
13.0
0.9576
-0.7494
0.5961
151.2494
38.9038
150.
39.2
0.8267
-0.7494
0.349
14.7
15.16
0
0
0
0
0
0
0
0
0
0
0
0
8
0
217.4125
25.5059
233.0
24.0
242.2372
23.9957
143.0
253.0
31090.0
6453.0
67.9713
8.4341
0.9225
0.0
143.0
0.0
1.0
0.0
172.0
39.0
12.0
0.1344
-0.0713
0.1139
172.0713
38.886
172.
38.6
0.3234
0.1873
-0.2636
13.1832
13.919
0
0
0
0
0
0
0
0
0
0
0
0
9
0
122.5967
25.3277
129.0
25.0
136.5106
23.6095
124.0
296.0
15202.0
7497.0
28.0068
4.1334
0.8104
0.0
124.0
0.0
1.0
0.0
194.0
39.0
12.0
0.378
0.354
0.1324
193.6459
38.8675
193.
38.8
0.2373
0.233
-0.0449
12.3302
12.92
0
0
0
0
0
0
0
0
0
0
0
0
10
0
194.2374
24.1032
206.0
24.0
209.7555
23.0384
139.0
281.0
26999.0
6773.0
59.8859
3.315
0.9266
0.0
139.0
0.0
1.0
0.0
214.0
38.0
12.0
0.9885
-0.5051
-0.8497
214.5051
38.8497
213.
38.0
0.97
-0.5699
-0.7849
13.1863
13.4919
0
0
0
0
0
0
0
0
0
0
0
0
11
0
84.5
24.7834
88.0
24.0
88.9047
23.6787
126.0
314.0
10647.0
7782.0
15.5873
3.7617
0.8181
0.0
126.0
0.0
1.0
0.0
236.0
39.0
12.0
0.223
-0.1457
0.1688
236.1457
38.8311
236.
38.8
0.0948
0.0923
-0.0216
12.3523
13.0916
0
0
0
0
0
0
0
0
0
0
0
0
12
0
59.6198
25.0116
60.0
24.0
59.9399
24.3902
121.0
257.0
7214.0
6428.0
7.939
3.8558
0.7806
0.0
121.0
0.0
1.0
0.0
258.0
39.0
12.0
0.9288
0.9099
0.1867
257.09
38.8132
257.
38.5
0.5788
0.5214
-0.2512
12.157
12.7584
0
0
0
0
0
0
0
0
0
0
0
0
13
0
57.872
25.3794
59.0
25.0
59.3658
25.4285
125.0
253.0
7234.0
6421.0
8.692
3.6157
0.8012
0.0
125.0
0.0
1.0
0.0
278.0
39.0
12.0
0.4843
-0.4388
0.205
278.4388
38.7949
278.
38.6
0.358
-0.3188
-0.1629
12.2103
13.1274
0
0
0
0
0
0
0
0
0
0
0
0
14
0
3295.6496
25.007
3651.0
25.0
3682.644
24.4759
157.0
283.0
517417.0
7077.0
1755.9842
4.0717
0.7929
0.0
157.0
0.0
1.0
0.0
299.0
38.0
12.0
0.7987
-0.1841
-0.7772
299.1841
38.7772
298.
38.5
0.4155
-0.3178
-0.2676
14.1456
14.2197
0
0
0
0
0
0
0
0
0
0
0
0
15
0
46.4621
24.6199
46.0
24.0
47.0851
24.0326
119.0
321.0
5529.0
7903.0
5.8665
3.5632
0.7727
0.0
119.0
0.0
1.0
0.0
320.0
39.0
12.0
0.3819
-0.2964
0.2408
320.2964
38.7591
320.
39.3
0.6223
-0.2712
0.5601
12.1147
12.6333
0
0
0
0
0
0
0
0
0
0
0
0
16
0
84.25
24.4044
86.0
24.0
85.6458
23.6544
124.0
272.0
10447.0
6638.0
15.3505
3.7365
0.7948
0.0
124.0
0.0
1.0
0.0
341.0
39.0
12.0
0.5673
-0.5048
0.2589
341.5048
38.741
341.
38.6
0.3791
-0.3596
-0.12
12.2564
12.9765
0
0
0
0
0
0
0
0
0
0
0
0
17
0
38.313
24.5446
38.0
24.0
37.7999
24.0499
115.0
325.0
4406.0
7977.0
4.8514
2.8847
0.7419
0.0
115.0
0.0
1.0
0.0
362.0
39.0
12.0
0.9421
-0.9004
0.2772
362.9004
38.7227
362.
38.9
0.5096
-0.4482
0.2425
11.8577
12.5214
0
0
0
0
0
0
0
0
0
0
0
0
18
0
13712.1083
29.2168
17172.0
25.0
17705.6953
25.3888
147.0
249.0
2015680.0
7275.0
6397.9614
19.538
0.9545
0.0
147.0
0.0
1.0
0.0
384.0
39.0
12.0
0.3581
0.2027
0.2951
383.7972
38.7048
384.
38.6
0.3058
0.3048
-0.0245
13.4596
13.9951
0
0
0
0
0
0
0
0
0
0
0
0
19
0
46.3008
24.4563
46.0
24.0
46.4054
23.5384
123.0
309.0
5695.0
7557.0
6.5081
3.5774
0.7987
0.0
123.0
0.0
1.0
0.0
405.0
39.0
12.0
0.3133
0.0054
0.3133
404.9945
38.6866
405.
39.2
0.6438
0.3224
0.5572
12.1665
12.9934
0
0
0
0
0
0
0
0
0
0
0
0
20
0
44.8495
24.5508
45.0
24.0
45.7714
23.6645
113.0
305.0
5068.0
7488.0
5.5049
3.4836
0.7243
0.0
113.0
0.0
1.0
0.0
426.5
38.5
11.0
0.3496
0.3063
-0.1685
426.1936
38.6685
426.
38.4
0.268
0.0895
-0.2526
11.9235
12.2113
0
0
0
0
0
0
0
0
0
0
0
0
Total number of rows:
22575
Table truncated, full table size
5541 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM111811.txt.gz
1.9 Mb
(ftp)
(http)
TXT
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