NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM111815 Query DataSets for GSM111815
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 78 male D. melanogaster, biological rep3
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 94.7886 47.6214 96.0 47.0 96.9499 47.0 123.0 317.0 11659.0 15096.0 13.5845 5.4554 0.8199 0.0 123.0 0.0 1.0 0.0 24.0 39.0 12.0 0.062 -0.0607 -0.0127 24.0607 39.0127 24.0 39.1 0.1151 -0.0363 0.1092 12.4269 12.7485 0 0 0 0 0 0 0 0 0 0 0 0
2 0 50.688 47.1993 50.0 47.0 50.4 46.6696 109.0 331.0 5525.0 15623.0 4.7751 4.9201 1.0 0.0 109.0 0.0 1.0 0.0 45.0 38.0 12.0 1.004 -0.1371 -0.9946 45.1371 38.9946 45.0 38.0 1.004 -0.1371 -0.9946 11.8404 11.8404 0 0 0 0 0 0 0 0 1 0 0 0
3 0 68.054 46.9483 68.0 47.0 67.8235 48.0465 111.0 329.0 7554.0 15446.0 8.5105 5.1753 0.7161 0.0 111.0 0.0 0.9659 0.0 66.0 40.0 12.0 1.1287 -0.4757 1.0235 66.4757 38.9764 66.3 39.5 0.5993 -0.1424 0.5821 11.5749 12.5292 0 0 0 0 0 0 0 0 0 0 0 0
4 0 84.3805 47.9135 85.0 47.0 90.8064 45.129 113.0 347.0 9535.0 16626.0 11.9751 5.6373 0.7533 0.0 113.0 0.0 1.0 0.0 87.0 38.0 12.0 1.0427 -0.4107 -0.9584 87.4107 38.9584 87.0 38.0 0.9503 -0.4018 -0.8611 11.7988 12.3921 0 0 0 0 0 0 0 0 0 0 0 0
5 0 94.6488 48.3664 92.0 47.5 90.3114 47.0986 131.0 262.0 12399.0 12672.0 32.8939 8.6246 0.6517 25.0 156.0 468.5 1.0 0.0 109.5 39.5 13.0 0.7932 0.5618 0.5599 108.9381 38.94 108. 39.2 0.7401 -0.648 0.3576 12.0118 14.1047 0 0 0 0 0 0 0 0 0 0 0 0
6 0 57.7247 48.045 57.0 48.0 56.7575 46.9618 109.0 311.0 6292.0 14942.0 6.6963 5.2455 1.0 0.0 109.0 0.0 1.0 0.0 129.0 38.0 12.0 1.189 -0.7505 -0.9222 129.7505 38.9222 129. 38.0 1.189 -0.7505 -0.9222 11.8404 11.8404 0 0 0 0 0 0 0 0 1 0 0 0
7 0 161.6643 47.9466 165.0 47.0 171.9607 47.0686 146.0 281.0 23603.0 13473.0 36.4227 8.3004 0.7227 10.0 156.0 272.5 1.0 0.0 150.5 39.5 13.0 0.9576 -0.7494 0.5961 151.2494 38.9038 150. 39.2 0.9971 -0.9412 0.329 13.372 14.1223 0 0 0 0 0 0 0 0 0 0 0 0
8 0 484.3768 49.1705 530.5 48.0 552.673 47.5641 138.0 258.0 66844.0 12686.0 149.0333 8.7618 0.8903 0.0 138.0 0.0 1.0 0.0 172.0 39.0 12.0 0.1344 -0.0713 0.1139 172.0713 38.886 172. 38.6 0.2781 0.1387 -0.2411 12.916 13.7077 0 0 0 0 0 0 0 0 0 0 0 0
9 0 142.7931 49.0493 145.0 48.0 149.8648 44.3076 116.0 304.0 16564.0 14911.0 24.1591 6.463 0.7483 0.0 116.0 0.0 1.0 0.0 194.0 39.0 12.0 0.378 0.354 0.1324 193.6459 38.8675 193. 38.7 0.2845 0.2506 -0.1348 11.9558 12.4759 0 0 0 0 0 0 0 0 0 0 0 0
10 0 74.3693 47.7119 74.0 47.0 75.0714 46.9243 111.0 309.0 8255.0 14743.0 9.0094 5.6703 0.735 0.0 111.0 0.0 1.0 0.0 214.0 38.0 12.0 0.9885 -0.5051 -0.8497 214.5051 38.8497 213. 38.0 1.1136 -0.7304 -0.8407 11.5019 12.4253 0 0 0 0 0 0 0 0 0 0 0 0
11 0 76.5462 47.3052 76.0 47.0 77.2121 46.5048 119.0 321.0 9109.0 15185.0 9.6386 5.1736 0.7727 0.0 119.0 0.0 1.0 0.0 236.0 39.0 12.0 0.223 -0.1457 0.1688 236.1457 38.8311 236. 38.7 0.0934 0.0559 -0.0748 12.0416 12.7152 0 0 0 0 0 0 0 0 0 0 0 0
12 0 88.856 47.826 90.0 48.0 93.9459 46.5131 125.0 253.0 11107.0 12100.0 13.5142 5.311 0.7961 0.0 125.0 0.0 1.0 0.0 258.0 39.0 12.0 0.9288 0.9099 0.1867 257.09 38.8132 257. 38.4 0.8174 0.7098 -0.4052 12.2254 13.1129 0 0 0 0 0 0 0 0 0 0 0 0
13 0 71.0769 48.3256 70.0 48.0 70.2333 47.5374 117.0 261.0 8316.0 12613.0 8.442 5.2789 0.75 0.0 117.0 0.0 1.0 0.0 278.0 39.0 12.0 0.4843 -0.4388 0.205 278.4388 38.7949 278. 38.6 0.3352 -0.302 -0.1454 12.0147 12.651 0 0 0 0 0 0 0 0 0 0 0 0
14 0 79.3471 47.9278 80.0 48.0 83.3939 48.5 121.0 319.0 9601.0 15289.0 11.4022 5.4356 0.7806 0.0 121.0 0.0 1.0 0.0 299.0 38.0 12.0 0.7987 -0.1841 -0.7772 299.1841 38.7772 298. 38.5 0.3195 -0.2502 -0.1987 12.1679 12.7814 0 0 0 0 0 0 0 0 0 0 0 0
15 0 71.7913 47.7876 71.0 47.0 71.0333 47.0483 115.0 325.0 8256.0 15531.0 8.0956 5.6531 0.7615 0.0 115.0 0.0 1.0 0.0 320.0 39.0 12.0 0.3819 -0.2964 0.2408 320.2964 38.7591 319. 39.1 0.5289 -0.3051 0.4321 11.8209 12.6028 0 0 0 0 0 0 0 0 0 0 0 0
16 0 106.8534 48.6107 108.0 48.0 109.238 46.1346 116.0 280.0 12395.0 13611.0 16.4742 5.8114 0.7532 0.0 116.0 0.0 1.0 0.0 341.0 39.0 12.0 0.5673 -0.5048 0.2589 341.5048 38.741 341. 38.6 0.2284 -0.2117 -0.0858 12.0644 12.3641 0 0 0 0 0 0 0 0 0 0 0 0
17 0 67.0446 47.3719 67.0 47.5 66.6857 47.9248 112.0 328.0 7509.0 15538.0 7.5076 5.4929 0.7179 0.0 112.0 0.0 0.9746 0.0 362.0 39.0 12.0 0.9421 -0.9004 0.2772 362.9004 38.7227 362. 38.8 0.421 -0.4093 0.0987 11.6401 12.562 0 0 0 0 0 0 0 0 0 0 0 0
18 0 38761.7851 52.5247 51669.5 50.0 54658.8398 48.5474 154.0 242.0 5969315.0 12711.0 21972.6562 11.6186 0.7661 0.0 154.0 0.0 1.0 0.0 384.0 39.0 12.0 0.3581 0.2027 0.2951 383.7972 38.7048 384. 38.6 0.3882 0.3781 -0.0879 13.9455 14.1622 0 0 0 0 0 0 0 0 0 0 0 0
19 0 69.9819 48.7993 70.0 48.0 70.549 46.4461 111.0 329.0 7768.0 16055.0 9.6422 6.0931 0.7207 0.0 111.0 0.0 1.0 0.0 405.0 39.0 12.0 0.3133 0.0054 0.3133 404.9945 38.6866 405. 39.2 0.6334 0.2666 0.5745 11.7637 12.1568 0 0 0 0 0 0 0 0 0 0 0 0
20 0 71.349 48.3118 70.0 48.0 70.4285 50.1052 106.0 311.0 7563.0 15025.0 7.9146 5.923 0.9137 0.0 106.0 0.0 1.0 0.0 426.5 38.5 11.0 0.3496 0.3063 -0.1685 426.1936 38.6685 426. 38.3 0.3773 0.0894 -0.3666 11.5297 11.8533 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5567 Kbytes.




Supplementary file Size Download File type/resource
GSM111815.txt.gz 1.9 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap