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Sample GSM111816 Query DataSets for GSM111816
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 78 male D. melanogaster, biological rep4
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 130.0243 46.3722 130.0 46.0 133.2749 45.9734 123.0 317.0 15993.0 14700.0 32.3181 5.616 0.7935 0.0 123.0 0.0 1.0 0.0 46.0 39.0 12.0 0.153 0.1143 0.1017 45.8856 38.8982 46.0 38.6 0.2426 0.1387 -0.199 12.2317 12.9194 0 0 0 0 0 0 0 0 0 0 0 0
2 0 50.9659 46.2941 50.0 46.0 50.1379 44.9929 88.0 374.0 4485.0 17314.0 5.6295 5.3341 0.7857 0.0 88.0 0.0 1.0 0.0 66.5 37.5 11.0 1.4775 -0.3941 -1.4239 66.8941 38.9239 66.5 37.5 1.4775 -0.3941 -1.4239 10.6287 10.6287 0 0 0 0 0 0 0 0 1 0 0 0
3 0 107.931 46.6635 109.0 46.0 109.2321 45.3773 116.0 324.0 12520.0 15119.0 18.7835 5.6224 0.7483 0.0 116.0 0.0 1.0 0.0 88.0 40.0 12.0 1.0823 -0.263 1.0498 88.263 38.9501 87.8 39.7 0.8641 -0.3665 0.7826 11.9559 12.4759 0 0 0 0 0 0 0 0 0 0 0 0
4 0 174.4529 47.1295 180.0 46.0 180.9454 45.8197 117.0 301.0 20411.0 14186.0 32.58 7.3208 0.7647 0.0 117.0 0.0 1.0 0.0 108.5 38.5 11.0 0.8588 -0.7149 -0.4757 109.2149 38.9757 108. 38.5 0.7729 -0.6252 -0.4544 12.1436 12.3462 0 0 0 0 0 0 0 0 0 0 0 0
5 0 154.8115 47.1335 136.5 46.0 135.7938 45.9335 138.0 277.0 21364.0 13056.0 111.3542 14.3951 0.6831 25.0 163.0 837.5 1.0 0.0 131.0 39.0 14.0 0.3879 0.3879 -0.0019 130.612 39.0019 129. 39.6 1.0292 -0.8366 0.5994 12.2608 14.6357 0 0 0 0 0 0 0 0 0 0 0 0
6 0 61.2403 46.4493 61.0 46.0 61.3658 45.9185 104.0 316.0 6369.0 14678.0 6.602 5.1797 0.9369 0.0 104.0 0.0 0.9546 0.0 151.0 38.0 12.0 1.1814 -0.5827 -1.0276 151.5827 39.0276 151. 37.9 1.1889 -0.5635 -1.0469 11.462 11.8275 0 0 0 0 0 0 0 0 0 0 0 0
7 0 189.1021 46.9241 195.0 46.0 195.9062 45.4427 137.0 277.0 25907.0 12998.0 45.4618 13.1702 0.6782 23.0 160.0 522.5 1.0 0.0 172.5 39.5 13.0 0.6692 -0.4989 0.446 172.9989 39.0539 171. 39.7 1.5589 -1.3711 0.7417 12.2027 14.4993 0 0 0 0 0 0 0 0 0 0 0 0
8 0 609.8134 47.5954 658.0 46.0 677.0333 45.649 134.0 262.0 81715.0 12470.0 149.6277 9.0808 0.8645 0.0 134.0 0.0 1.0 0.0 194.0 39.0 12.0 0.181 0.1626 -0.0794 193.8373 39.0794 194. 38.5 0.5546 0.2298 -0.5048 12.6324 13.5999 0 0 0 0 0 0 0 0 0 0 0 0
9 0 196.9837 45.9084 208.0 45.0 220.4857 44.9619 123.0 295.0 24229.0 13543.0 47.9808 6.035 0.7935 0.0 123.0 0.0 1.0 0.0 215.5 39.5 11.0 0.4226 0.1523 0.3942 215.3476 39.1057 215. 39.0 0.0434 0.0426 -0.0082 12.1915 12.9437 0 0 0 0 0 0 0 0 0 0 0 0
10 0 314.9922 47.2734 336.0 46.0 357.7924 45.0395 129.0 267.0 40634.0 12622.0 72.6685 8.1885 0.8376 0.0 129.0 0.0 1.0 0.0 236.0 39.0 12.0 0.3533 -0.328 -0.1314 236.328 39.1314 235. 38.4 0.8073 -0.4442 -0.6741 12.4563 13.2608 0 0 0 0 0 0 0 0 0 0 0 0
11 0 114.7131 46.418 115.0 47.0 116.9499 47.6603 129.0 311.0 14798.0 14436.0 20.286 5.5157 0.8322 0.0 129.0 0.0 1.0 0.0 258.0 39.0 12.0 0.1716 0.0673 -0.1579 257.9326 39.1579 258. 38.8 0.4449 0.3309 -0.2974 12.5293 13.2165 0 0 0 0 0 0 0 0 0 0 0 0
12 0 87.832 46.6689 88.0 46.0 88.3421 45.1217 125.0 293.0 10979.0 13674.0 11.4268 5.1505 0.8116 0.0 125.0 0.0 1.0 0.0 279.5 38.5 13.0 0.9389 0.6437 -0.6835 278.8562 39.1835 279. 38.6 0.7863 0.5357 -0.5755 12.5852 12.7549 0 0 0 0 0 0 0 0 0 0 0 0
13 0 91.2131 46.7264 92.0 46.0 95.5666 45.6323 122.0 318.0 11128.0 14859.0 13.1661 6.0483 0.8299 0.0 122.0 0.0 1.0 0.0 300.0 39.0 12.0 0.2937 -0.2057 -0.2097 300.2057 39.2097 299. 38.9 0.3407 -0.2549 -0.226 12.4197 12.6275 0 0 0 0 0 0 0 0 0 0 0 0
14 0 87.4107 45.4054 87.0 45.0 86.9117 41.9508 112.0 328.0 9790.0 14893.0 10.9907 5.4271 0.732 0.0 112.0 0.0 1.0 0.0 321.0 39.0 12.0 0.2527 -0.0924 -0.2352 321.0924 39.2352 320. 39.1 0.3382 -0.3334 -0.0567 11.8008 12.1935 0 0 0 0 0 0 0 0 0 0 0 0
15 0 94.0725 45.6139 94.0 45.0 96.037 45.3058 124.0 272.0 11665.0 12407.0 14.7025 5.254 0.8051 0.0 124.0 0.0 1.0 0.0 342.0 40.0 12.0 0.7461 -0.1029 0.7389 342.1029 39.261 341. 40.2 1.0003 -0.2642 0.9647 12.3096 12.9354 0 0 0 0 0 0 0 0 0 0 0 0
16 0 133.9553 46.1406 139.5 46.0 140.8974 44.3272 112.0 320.0 15003.0 14765.0 25.6297 6.089 0.7272 8.0 120.0 580.5 0.7611 0.0 363.0 39.0 12.0 0.4017 -0.2811 -0.2869 363.2811 39.2869 363. 39.2 0.1815 -0.1811 -0.0119 12.295 12.5483 0 0 0 0 0 0 0 0 0 0 0 0
17 0 70.8584 46.424 70.0 46.0 70.4137 45.4555 113.0 283.0 8007.0 13138.0 8.7692 5.3943 0.729 0.0 113.0 0.0 1.0 0.0 384.0 40.0 12.0 0.9651 -0.678 0.6868 384.678 39.3131 384. 39.6 0.5828 -0.4656 0.3505 11.5902 12.5718 0 0 0 0 0 0 0 0 0 0 0 0
18 0 28969.746 47.5791 38903.5 47.0 42713.3867 47.5069 162.0 278.0 4693099.0 13227.0 17693.2871 7.3002 0.814 0.0 162.0 0.0 1.0 0.0 406.0 39.0 12.0 0.5445 0.4263 -0.3387 405.5736 39.3387 405. 39.4 0.3493 0.3398 0.081 14.267 14.5391 0 0 0 0 0 0 0 0 0 0 0 0
19 0 80.5 46.3312 80.0 46.0 81.3333 46.9243 120.0 320.0 9660.0 14826.0 12.0235 5.5415 0.8163 0.0 120.0 0.0 1.0 0.0 427.0 40.0 12.0 0.647 0.1235 0.6351 426.8764 39.3648 426. 39.9 0.6145 0.0736 0.6101 12.1903 12.7022 0 0 0 0 0 0 0 0 0 0 0 0
20 0 88.2649 45.8142 89.0 45.0 90.4687 44.0163 117.0 323.0 10327.0 14798.0 12.5059 5.7169 0.7748 0.0 117.0 0.0 1.0 0.0 448.0 39.0 12.0 0.3907 0.0019 -0.3907 447.998 39.3907 448. 39.1 0.2415 0.0789 -0.2283 12.0525 12.494 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5596 Kbytes.




Supplementary file Size Download File type/resource
GSM111816.txt.gz 1.9 Mb (ftp)(http) TXT

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