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Sample GSM111821 Query DataSets for GSM111821
Status Public on Jun 06, 2006
Title Oregon R and 2B3 RIL 9 male D. melanogaster, biological rep2
Sample type RNA
 
Source name Oregon R and 2B3 RIL male D. melanogaster
Organism Drosophila melanogaster
Characteristics 20 pooled adult male individuals
Extracted molecule total RNA
Label Cy5
 
Description Oregon R and 2B3 RIL male D. melanogaster
Data processing Imagene v6.0 was used to process image and all results from Imagene listed
 
Submission date May 30, 2006
Last update date Jun 06, 2006
Contact name Lauren M. McIntyre
E-mail(s) mcintyre@ufl.edu
Phone (352) 273-8024
Organization name University of Florida
Department Dept. of Molecular Genetics and Microbiology
Street address PO Box 100266; R2-293
City Gainesville
State/province FL
ZIP/Postal code 32610-0266
Country USA
 
Platform ID GPL3809
Series (1)
GSE4976 Sex and line specific gene expression and alternative splicing in Drosophila revealed

Data table header descriptions
ID_REF uniquely identifies each spot
Flag
VALUE the signal mean--the natural log transform of the signal mean minus the background mean was used in
Background Mean
Signal Median
Background Median
Signal Mode
Background Mode
Signal Area
Background Area
Signal Total
Background Total
Signal Stdev
Background Stdev
Shape Regularity
Ignored Area
Spot Area
Ignored Median
Area To Perimeter
Open Perimeter
XCoord
YCoord
Diameter
Position offset
Offset X
Offset Y
Expected X
Expected Y
CM-X
CM-Y
CM Offset
CM Offset-X
CM Offset-Y
Min Diam
Max Diam
Control
Background contamination present
Signal contamination present
Ignored % failed
Open perimeter failed
Shape regularity failed
Perim-to-area failed
Offset failed
Empty spot
Negative spot
Selected spot
Saturated spot

Data table
ID_REF Flag VALUE Background Mean Signal Median Background Median Signal Mode Background Mode Signal Area Background Area Signal Total Background Total Signal Stdev Background Stdev Shape Regularity Ignored Area Spot Area Ignored Median Area To Perimeter Open Perimeter XCoord YCoord Diameter Position offset Offset X Offset Y Expected X Expected Y CM-X CM-Y CM Offset CM Offset-X CM Offset-Y Min Diam Max Diam Control Background contamination present Signal contamination present Ignored % failed Open perimeter failed Shape regularity failed Perim-to-area failed Offset failed Empty spot Negative spot Selected spot Saturated spot
1 0 108.0155 48.6688 106.0 49.0 106.2903 48.4432 129.0 311.0 13934.0 15136.0 21.7832 5.4297 0.8431 0.0 129.0 0.0 1.0 0.0 39.0 23.0 12.0 0.2555 -0.2222 -0.126 39.2222 23.126 39.0 23.3 0.3096 -0.2067 0.2304 12.7382 12.9916 0 0 0 0 0 0 0 0 0 0 0 0
2 0 58.1651 48.6794 58.0 48.0 59.7941 48.374 109.0 287.0 6340.0 13971.0 6.8409 6.0007 1.0 0.0 109.0 0.0 1.0 0.0 60.0 24.0 12.0 0.8791 -0.2591 0.84 60.2591 23.1599 60.0 24.0 0.8791 -0.2591 0.84 11.8404 11.8404 0 0 0 0 0 0 0 0 1 0 0 0
3 0 94.9075 48.3146 96.0 48.0 97.4324 47.5185 119.0 321.0 11294.0 15509.0 11.5888 5.8712 0.7727 0.0 119.0 0.0 1.0 0.0 81.0 23.0 12.0 0.3317 -0.2692 -0.1937 81.2692 23.1937 81.3 23.3 0.1829 0.05 0.1759 12.1833 12.5287 0 0 0 0 0 0 0 0 0 0 0 0
4 0 127.3499 48.345 127.0 48.0 127.8717 46.9909 120.0 342.0 15282.0 16534.0 16.0201 6.3479 0.7692 0.0 120.0 0.0 1.0 0.0 102.5 22.5 11.0 0.7305 -0.0607 -0.728 102.5607 23.228 102. 22.5 0.7305 -0.0607 -0.728 12.3935 12.3935 0 0 0 0 0 0 0 0 0 0 0 0
5 0 88.421 48.6041 89.0 48.0 90.9285 47.9484 152.0 288.0 13440.0 13998.0 10.8927 5.4971 0.7562 0.0 152.0 0.0 1.0 0.0 123.0 23.0 14.0 0.5523 -0.4863 -0.2617 123.4863 23.2617 123. 23.2 0.0393 -0.0389 -0.0051 13.6481 14.284 0 0 0 0 0 0 0 0 0 0 0 0
6 0 69.5826 48.6984 69.0 49.0 69.5955 50.6354 115.0 325.0 8002.0 15827.0 13.7575 5.431 0.7516 0.0 115.0 0.0 1.0 0.0 145.0 23.0 12.0 0.3189 0.1182 -0.2961 144.8817 23.2961 145. 23.2 0.1893 0.1791 -0.0614 11.8824 12.503 0 0 0 0 0 0 0 0 0 0 0 0
7 0 100.2564 48.2359 100.5 48.0 109.4418 45.9009 156.0 284.0 15640.0 13699.0 15.0016 5.7381 0.7722 0.0 156.0 0.0 1.0 0.0 166.0 24.0 14.0 0.6947 0.1833 0.6701 165.8166 23.3298 165. 23.5 0.2421 -0.1115 0.2149 13.8203 14.4536 0 0 0 0 0 0 0 0 0 0 0 0
8 0 135.9076 48.2312 139.0 48.0 142.7368 46.5187 130.0 307.0 17668.0 14807.0 19.9539 6.0202 0.8441 0.0 130.0 0.0 1.0 0.0 187.5 23.5 13.0 0.2933 0.2601 0.1356 187.2398 23.3643 187. 23.2 0.1615 0.0908 -0.1336 12.5356 13.3162 0 0 0 0 0 0 0 0 0 0 0 0
9 0 107.6178 49.552 105.0 49.0 107.271 49.3945 123.0 317.0 13237.0 15708.0 33.8027 7.2439 0.7935 0.0 123.0 0.0 1.0 0.0 209.0 23.0 12.0 0.5655 0.4009 -0.3987 208.599 23.3987 208. 23.3 0.2577 0.2383 -0.0979 12.2298 12.9303 0 0 0 0 0 0 0 0 0 0 0 0
10 0 106.865 49.5636 107.0 49.0 112.8 49.2416 126.0 314.0 13465.0 15563.0 15.0398 6.0815 0.8076 0.0 126.0 0.0 1.0 0.0 230.0 23.0 12.0 0.5532 0.3448 -0.4326 229.6551 23.4326 229. 22.8 0.6268 -0.0678 -0.6231 12.4314 13.0053 0 0 0 0 0 0 0 0 0 0 0 0
11 3 80.1582 50.0 79.0 49.0 79.1578 46.7642 139.0 301.0 11142.0 15050.0 10.9441 6.3971 0.5039 0.0 139.0 0.0 0.7274 0.0612 251.0 23.0 12.0 0.4698 0.0519 -0.4669 250.948 23.4669 250. 24.2 1.0256 -0.6602 0.7848 11.4082 17.8214 0 0 0 0 0 1 0 0 0 0 0 0
12 0 78.4639 48.9841 79.0 48.0 80.9411 46.7789 125.0 253.0 9808.0 12393.0 9.0177 5.6533 0.8012 0.0 125.0 0.0 1.0 0.0 273.0 23.0 12.0 0.826 0.6564 -0.5013 272.3435 23.5013 272. 23.2 0.3153 0.2164 -0.2293 12.3486 13.0037 0 0 0 0 0 0 0 0 0 0 0 0
13 0 89.3658 48.643 89.0 49.0 90.0 48.1067 123.0 297.0 10992.0 14447.0 12.0643 6.0062 0.7884 0.0 123.0 0.0 1.0 0.0 293.0 23.0 12.0 0.6262 -0.3252 -0.5351 293.3252 23.5351 293. 23.3 0.2837 -0.2276 -0.1693 12.4073 12.7638 0 0 0 0 0 0 0 0 0 0 0 0
14 0 72.7249 48.7993 67.0 48.0 68.0677 48.9016 120.0 319.0 8727.0 15567.0 45.577 5.2502 0.8 1.0 121.0 94.0 1.0 0.0 314.0 23.0 12.0 0.6033 0.203 -0.5681 313.7969 23.5681 313. 22.9 0.6253 0.0946 -0.6181 12.4095 12.5661 0 0 0 0 0 0 0 0 0 0 0 0
15 0 68.0983 47.7299 68.0 47.0 68.0789 46.4197 122.0 274.0 8308.0 13078.0 7.8305 5.4054 0.787 0.0 122.0 0.0 1.0 0.0 335.0 24.0 12.0 0.4123 -0.1092 0.3975 335.1092 23.6024 335. 23.7 0.1276 0.0464 0.1188 12.2527 12.8147 0 0 0 0 0 0 0 0 0 0 0 0
16 0 77.4869 48.8523 77.0 49.0 80.2222 47.5367 115.0 325.0 8911.0 15877.0 8.3138 5.7117 0.7419 0.0 115.0 0.0 1.0 0.0 356.0 23.0 12.0 0.677 -0.2308 -0.6364 356.2308 23.6364 356. 23.0 0.6147 0.0734 -0.6103 12.0688 12.2781 0 0 0 0 0 0 0 0 0 0 0 0
17 0 75.4122 48.6149 75.0 48.0 76.074 47.5161 114.0 322.0 8597.0 15654.0 8.0063 5.5533 0.7307 4.0 118.0 179.5 1.0 0.0 378.0 24.0 12.0 0.4015 0.2304 0.3288 377.7695 23.6711 377. 24.5 0.9009 -0.059 0.899 11.995 12.2616 0 0 0 0 0 0 0 0 0 0 0 0
18 0 10251.4765 50.7469 12917.0 49.0 13732.5576 48.4918 151.0 245.0 1547973.0 12433.0 5077.7451 8.6596 0.7438 0.0 151.0 0.0 1.0 0.0 399.0 24.0 12.0 0.3636 0.2125 0.295 398.7874 23.7049 398. 23.6 0.0359 0.0205 -0.0294 13.6436 14.1848 0 0 0 0 0 0 0 0 0 0 0 0
19 0 71.2946 49.4146 70.5 49.0 71.0833 48.4841 112.0 328.0 7985.0 16208.0 8.6845 5.7735 0.7179 0.0 112.0 0.0 1.0 0.0 420.0 24.0 12.0 0.2629 0.0322 0.2609 419.9677 23.739 419. 24.3 0.6199 -0.0481 0.618 11.7332 12.288 0 0 0 0 0 0 0 0 0 0 0 0
20 0 66.7435 48.808 66.0 48.0 66.7555 47.4368 117.0 323.0 7809.0 15765.0 6.9148 5.4004 0.75 0.0 117.0 0.0 1.0 0.0 441.0 23.0 12.0 0.8126 -0.2496 -0.7733 441.2496 23.7733 440. 23.5 0.3563 -0.2752 -0.2263 12.0129 12.6282 0 0 0 0 0 0 0 0 0 0 0 0

Total number of rows: 22575

Table truncated, full table size 5573 Kbytes.




Supplementary file Size Download File type/resource
GSM111821.txt.gz 1.9 Mb (ftp)(http) TXT

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