NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM111871 Query DataSets for GSM111871
Status Public on Sep 22, 2006
Title P. berghei wt vs Dz H2
Sample type RNA
 
Channel 1
Source name Plasmodium berghei wt
Organism Plasmodium berghei
Characteristics genotype: wild type
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Plasmodium berghei mutant H2
Organism Plasmodium berghei
Characteristics genotype: mutant H2
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol Axon
Description samples and hybridizations done with Agilent technologies kit
Data processing Axon GenePix
 
Submission date May 31, 2006
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL3824
Series (1)
GSE5889 Regulation of sexual development of Plasmodium by translational repression.

Data table header descriptions
ID_REF
F635 Median F635 Median
F635 Mean F635 Mean
F635 SD F635 SD
F635 CV F635 CV
B635 B635
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
B635 CV B635 CV
% > B635+1SD % > B635+1SD
% > B635+2SD % > B635+2SD
F635 % Sat. F635 % Sat.
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
F532 CV F532 CV
B532 B532
B532 Median B532 Median
B532 Mean B532 Mean
B532 SD B532 SD
B532 CV B532 CV
% > B532+1SD % > B532+1SD
% > B532+2SD % > B532+2SD
F532 % Sat. F532 % Sat.
Ratio of Medians (635/532) Ratio of Medians (635/532)
Ratio of Means (635/532) Ratio of Means (635/532)
Median of Ratios (635/532) Median of Ratios (635/532)
Mean of Ratios (635/532) Mean of Ratios (635/532)
Ratios SD (635/532) Ratios SD (635/532)
Rgn Ratio (635/532) Rgn Ratio (635/532)
Rgn R2 (635/532) Rgn R2 (635/532)
F Pixels F Pixels
B Pixels B Pixels
Circularity Circularity
Sum of Medians (635/532) Sum of Medians (635/532)
Sum of Means (635/532) Sum of Means (635/532)
VALUE Log2 ratio
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
F635 Total Intensity F635 Total Intensity
F532 Total Intensity F532 Total Intensity
SNR 635 SNR 635
SNR 532 SNR 532
Flags Spot Flags

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags
PB000000.00.0 704 808 566 70 154 154 195 168 86 78 65 0 899 939 424 45 134 134 163 126 77 95 92 0 0.719 0.812 0.866 0.667 2.97 1.13 0.566 120 578 100 1315 1459 -0.476 550 765 654 805 96907 112710 3.649 6.159 Bad
PB000000.01.0 4075 4505 2783 61 137 137 176 164 93 99 97 0 1229 1388 726 52 129 129 154 120 77 96 94 0 3.58 3.469 3.283 3.165 1.985 4.018 0.773 120 604 100 5038 5627 1.84 3938 1100 4368 1259 540612 166561 26.396 10.283 Good
PB000001.00.0 1053 1120 727 64 142 142 192 186 96 87 78 0 1387 1582 852 53 127 127 170 151 88 98 95 0 0.723 0.672 0.642 0.586 2.376 0.69 0.608 120 558 100 2171 2433 -0.468 911 1260 978 1455 134432 189832 4.989 9.351 Bad
PB000001.01.0 1631 1727 858 49 172 172 240 430 179 97 77 0 893 951 391 41 146 146 173 132 76 97 96 0 1.953 1.932 1.847 1.908 2.045 2.139 0.709 80 511 100 2206 2360 0.966 1459 747 1555 805 138141 76071 3.458 5.894 Good
PB000001.03.0 3267 3720 2062 55 147 147 189 164 86 96 96 0 2714 3099 1926 62 132 132 158 118 74 95 94 0 1.208 1.204 1.156 1.323 1.889 1.157 0.863 120 610 100 5702 6540 0.273 3120 2582 3573 2967 446361 371907 21.53 24.924 Bad
PB000002.00.0 647 721 469 65 135 135 174 158 90 83 69 0 944 1067 579 54 120 120 136 92 67 97 95 0 0.621 0.619 0.599 0.535 2.624 0.633 0.534 120 546 100 1336 1533 -0.687 512 824 586 947 86565 128068 3.462 10.12 Good
PB000002.01.0 395 455 307 67 161 161 215 323 150 36 13 0 616 698 356 51 121 121 150 134 89 95 85 0 0.473 0.51 0.634 0.478 2.899 1.362 0.236 80 512 100 729 871 -1.081 234 495 294 577 36366 55874 0.743 4.09 Bad
PB000002.02.0 2679 3121 3160 101 146 146 249 814 326 94 75 0 3426 3481 1625 46 122 122 202 906 448 93 86 0 0.767 0.886 0.758 0.803 2.05 1.198 0.605 120 554 100 5837 6334 -0.383 2533 3304 2975 3359 374548 417732 3.528 3.619 Good
PB000002.03.0 7348 7843 3396 43 151 151 190 167 87 100 98 0 9772 10291 4582 44 122 122 145 108 74 100 100 0 0.746 0.756 0.747 0.782 1.417 0.739 0.94 120 650 100 16847 17861 -0.423 7197 9650 7692 10169 941117 1234969 45.826 93.944 Good
PB000003.00.0 2912 3251 1648 50 170 170 206 239 116 98 97 0 3736 3908 1343 34 140 140 169 205 121 100 100 0 0.763 0.818 0.746 0.745 1.753 0.833 0.818 80 560 100 6338 6849 -0.391 2742 3596 3081 3768 260097 312618 12.741 18.239 Good
PB000003.01.0 1905 1904 957 50 156 156 210 341 162 96 85 0 1753 1868 822 44 130 130 159 165 103 97 96 0 1.078 1.006 0.979 0.947 1.885 1.12 0.693 120 570 100 3372 3486 0.108 1749 1623 1748 1738 228486 224174 4.968 10.358 Bad
PB000003.02.0 646 757 461 60 134 134 182 177 97 83 70 0 723 775 399 51 123 123 154 157 101 93 76 0 0.853 0.956 0.928 0.914 2.321 1.033 0.474 120 558 100 1112 1275 -0.229 512 600 623 652 90828 93026 3.249 3.955 Bad
PB000003.03.0 2941 3141 1483 47 133 133 204 343 168 98 96 0 4442 4512 2143 47 127 127 169 184 108 95 94 0 0.651 0.686 0.662 0.742 1.877 0.666 0.823 120 540 100 7123 7393 -0.62 2808 4315 3008 4385 376883 541420 8.563 23.603 Good
PB000004.00.0 703 795 519 65 181 181 237 433 182 57 25 0 560 589 272 46 131 131 151 112 74 93 84 0 1.217 1.341 1.246 1.189 2.86 2.077 0.315 120 541 100 951 1072 0.283 522 429 614 458 95403 70712 1.289 3.911 Bad
PB000004.01.0 4240 4802 2891 60 172 172 231 274 118 98 98 0 4513 5048 2864 56 145 145 176 139 78 98 97 0 0.931 0.944 0.911 0.916 1.536 0.964 0.9 120 568 100 8436 9533 -0.103 4068 4368 4630 4903 576239 605806 16.682 35.05 Good
PB000004.02.0 9082 10478 6517 62 129 129 168 158 94 99 99 0 6788 7423 4401 59 111 111 133 104 78 100 99 0 1.341 1.415 1.424 1.384 1.672 1.465 0.891 120 654 100 15630 17661 0.423 8953 6677 10349 7312 1257302 890772 65.253 70.096 Good
PB000004.03.0 917 949 561 59 162 162 209 284 135 80 60 0 871 968 528 54 124 124 150 119 79 91 90 0 1.011 0.932 0.823 0.822 2.537 1.013 0.549 120 576 100 1502 1631 0.015 755 747 787 844 113923 116155 2.606 6.874 Bad
PB000005.00.0 353 402 291 72 156 156 203 204 100 50 24 0 400 406 223 54 130 130 150 112 74 70 56 0 0.73 0.891 1.015 0.994 3.972 2.175 0.14 120 646 100 467 522 -0.455 197 270 246 276 48289 48769 0.975 2.286 Good
PB000005.01.0 1733 1884 1264 67 125 125 169 152 89 97 88 0 2002 2302 1419 61 114 114 140 107 76 99 97 0 0.852 0.804 0.795 0.728 2.163 0.803 0.772 120 593 100 3496 3947 -0.232 1608 1888 1759 2188 226103 276242 11.283 20.206 Bad
PB000005.03.0 1461 1573 894 56 167 167 205 183 89 92 87 0 971 1001 510 50 136 136 159 114 71 93 90 0 1.55 1.625 1.531 1.599 2.392 1.821 0.656 120 594 100 2129 2271 0.632 1294 835 1406 865 188771 120101 7.475 7.386 Good

Total number of rows: 5283

Table truncated, full table size 1132 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap