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GEO accession:
Sample GSM111871
Query DataSets for GSM111871
Status
Public on Sep 22, 2006
Title
P. berghei wt vs Dz H2
Sample type
RNA
Channel 1
Source name
Plasmodium berghei wt
Organism
Plasmodium berghei
Characteristics
genotype: wild type
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
Plasmodium berghei mutant H2
Organism
Plasmodium berghei
Characteristics
genotype: mutant H2
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
Axon
Description
samples and hybridizations done with Agilent technologies kit
Data processing
Axon GenePix
Submission date
May 31, 2006
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
gdimopo1@jhu.edu
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL3824
Series (1)
GSE5889
Regulation of sexual development of Plasmodium by translational repression.
Data table header descriptions
ID_REF
F635 Median
F635 Median
F635 Mean
F635 Mean
F635 SD
F635 SD
F635 CV
F635 CV
B635
B635
B635 Median
B635 Median
B635 Mean
B635 Mean
B635 SD
B635 SD
B635 CV
B635 CV
% > B635+1SD
% > B635+1SD
% > B635+2SD
% > B635+2SD
F635 % Sat.
F635 % Sat.
F532 Median
F532 Median
F532 Mean
F532 Mean
F532 SD
F532 SD
F532 CV
F532 CV
B532
B532
B532 Median
B532 Median
B532 Mean
B532 Mean
B532 SD
B532 SD
B532 CV
B532 CV
% > B532+1SD
% > B532+1SD
% > B532+2SD
% > B532+2SD
F532 % Sat.
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Medians (635/532)
Ratio of Means (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Rgn R2 (635/532)
F Pixels
F Pixels
B Pixels
B Pixels
Circularity
Circularity
Sum of Medians (635/532)
Sum of Medians (635/532)
Sum of Means (635/532)
Sum of Means (635/532)
VALUE
Log2 ratio
F635 Median - B635
F635 Median - B635
F532 Median - B532
F532 Median - B532
F635 Mean - B635
F635 Mean - B635
F532 Mean - B532
F532 Mean - B532
F635 Total Intensity
F635 Total Intensity
F532 Total Intensity
F532 Total Intensity
SNR 635
SNR 635
SNR 532
SNR 532
Flags
Spot Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
PB000000.00.0
704
808
566
70
154
154
195
168
86
78
65
0
899
939
424
45
134
134
163
126
77
95
92
0
0.719
0.812
0.866
0.667
2.97
1.13
0.566
120
578
100
1315
1459
-0.476
550
765
654
805
96907
112710
3.649
6.159
Bad
PB000000.01.0
4075
4505
2783
61
137
137
176
164
93
99
97
0
1229
1388
726
52
129
129
154
120
77
96
94
0
3.58
3.469
3.283
3.165
1.985
4.018
0.773
120
604
100
5038
5627
1.84
3938
1100
4368
1259
540612
166561
26.396
10.283
Good
PB000001.00.0
1053
1120
727
64
142
142
192
186
96
87
78
0
1387
1582
852
53
127
127
170
151
88
98
95
0
0.723
0.672
0.642
0.586
2.376
0.69
0.608
120
558
100
2171
2433
-0.468
911
1260
978
1455
134432
189832
4.989
9.351
Bad
PB000001.01.0
1631
1727
858
49
172
172
240
430
179
97
77
0
893
951
391
41
146
146
173
132
76
97
96
0
1.953
1.932
1.847
1.908
2.045
2.139
0.709
80
511
100
2206
2360
0.966
1459
747
1555
805
138141
76071
3.458
5.894
Good
PB000001.03.0
3267
3720
2062
55
147
147
189
164
86
96
96
0
2714
3099
1926
62
132
132
158
118
74
95
94
0
1.208
1.204
1.156
1.323
1.889
1.157
0.863
120
610
100
5702
6540
0.273
3120
2582
3573
2967
446361
371907
21.53
24.924
Bad
PB000002.00.0
647
721
469
65
135
135
174
158
90
83
69
0
944
1067
579
54
120
120
136
92
67
97
95
0
0.621
0.619
0.599
0.535
2.624
0.633
0.534
120
546
100
1336
1533
-0.687
512
824
586
947
86565
128068
3.462
10.12
Good
PB000002.01.0
395
455
307
67
161
161
215
323
150
36
13
0
616
698
356
51
121
121
150
134
89
95
85
0
0.473
0.51
0.634
0.478
2.899
1.362
0.236
80
512
100
729
871
-1.081
234
495
294
577
36366
55874
0.743
4.09
Bad
PB000002.02.0
2679
3121
3160
101
146
146
249
814
326
94
75
0
3426
3481
1625
46
122
122
202
906
448
93
86
0
0.767
0.886
0.758
0.803
2.05
1.198
0.605
120
554
100
5837
6334
-0.383
2533
3304
2975
3359
374548
417732
3.528
3.619
Good
PB000002.03.0
7348
7843
3396
43
151
151
190
167
87
100
98
0
9772
10291
4582
44
122
122
145
108
74
100
100
0
0.746
0.756
0.747
0.782
1.417
0.739
0.94
120
650
100
16847
17861
-0.423
7197
9650
7692
10169
941117
1234969
45.826
93.944
Good
PB000003.00.0
2912
3251
1648
50
170
170
206
239
116
98
97
0
3736
3908
1343
34
140
140
169
205
121
100
100
0
0.763
0.818
0.746
0.745
1.753
0.833
0.818
80
560
100
6338
6849
-0.391
2742
3596
3081
3768
260097
312618
12.741
18.239
Good
PB000003.01.0
1905
1904
957
50
156
156
210
341
162
96
85
0
1753
1868
822
44
130
130
159
165
103
97
96
0
1.078
1.006
0.979
0.947
1.885
1.12
0.693
120
570
100
3372
3486
0.108
1749
1623
1748
1738
228486
224174
4.968
10.358
Bad
PB000003.02.0
646
757
461
60
134
134
182
177
97
83
70
0
723
775
399
51
123
123
154
157
101
93
76
0
0.853
0.956
0.928
0.914
2.321
1.033
0.474
120
558
100
1112
1275
-0.229
512
600
623
652
90828
93026
3.249
3.955
Bad
PB000003.03.0
2941
3141
1483
47
133
133
204
343
168
98
96
0
4442
4512
2143
47
127
127
169
184
108
95
94
0
0.651
0.686
0.662
0.742
1.877
0.666
0.823
120
540
100
7123
7393
-0.62
2808
4315
3008
4385
376883
541420
8.563
23.603
Good
PB000004.00.0
703
795
519
65
181
181
237
433
182
57
25
0
560
589
272
46
131
131
151
112
74
93
84
0
1.217
1.341
1.246
1.189
2.86
2.077
0.315
120
541
100
951
1072
0.283
522
429
614
458
95403
70712
1.289
3.911
Bad
PB000004.01.0
4240
4802
2891
60
172
172
231
274
118
98
98
0
4513
5048
2864
56
145
145
176
139
78
98
97
0
0.931
0.944
0.911
0.916
1.536
0.964
0.9
120
568
100
8436
9533
-0.103
4068
4368
4630
4903
576239
605806
16.682
35.05
Good
PB000004.02.0
9082
10478
6517
62
129
129
168
158
94
99
99
0
6788
7423
4401
59
111
111
133
104
78
100
99
0
1.341
1.415
1.424
1.384
1.672
1.465
0.891
120
654
100
15630
17661
0.423
8953
6677
10349
7312
1257302
890772
65.253
70.096
Good
PB000004.03.0
917
949
561
59
162
162
209
284
135
80
60
0
871
968
528
54
124
124
150
119
79
91
90
0
1.011
0.932
0.823
0.822
2.537
1.013
0.549
120
576
100
1502
1631
0.015
755
747
787
844
113923
116155
2.606
6.874
Bad
PB000005.00.0
353
402
291
72
156
156
203
204
100
50
24
0
400
406
223
54
130
130
150
112
74
70
56
0
0.73
0.891
1.015
0.994
3.972
2.175
0.14
120
646
100
467
522
-0.455
197
270
246
276
48289
48769
0.975
2.286
Good
PB000005.01.0
1733
1884
1264
67
125
125
169
152
89
97
88
0
2002
2302
1419
61
114
114
140
107
76
99
97
0
0.852
0.804
0.795
0.728
2.163
0.803
0.772
120
593
100
3496
3947
-0.232
1608
1888
1759
2188
226103
276242
11.283
20.206
Bad
PB000005.03.0
1461
1573
894
56
167
167
205
183
89
92
87
0
971
1001
510
50
136
136
159
114
71
93
90
0
1.55
1.625
1.531
1.599
2.392
1.821
0.656
120
594
100
2129
2271
0.632
1294
835
1406
865
188771
120101
7.475
7.386
Good
Total number of rows:
5283
Table truncated, full table size
1132 Kbytes
.
Supplementary data files not provided
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