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Sample GSM111872 Query DataSets for GSM111872
Status Public on Sep 22, 2006
Title P. berghei wt vs Dz H3
Sample type RNA
 
Channel 1
Source name Plasmodium berghei wt
Organism Plasmodium berghei
Characteristics genotype: wild type
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Plasmodium berghei mutant H3
Organism Plasmodium berghei
Characteristics genotype: mutant H3
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol Axon
Description samples and hybridizations done with Agilent technologies kit
Data processing Axon GenePix
 
Submission date May 31, 2006
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL3824
Series (1)
GSE5889 Regulation of sexual development of Plasmodium by translational repression.

Data table header descriptions
ID_REF
F635 Median F635 Median
F635 Mean F635 Mean
F635 SD F635 SD
F635 CV F635 CV
B635 B635
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
B635 CV B635 CV
% > B635+1SD % > B635+1SD
% > B635+2SD % > B635+2SD
F635 % Sat. F635 % Sat.
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
F532 CV F532 CV
B532 B532
B532 Median B532 Median
B532 Mean B532 Mean
B532 SD B532 SD
B532 CV B532 CV
% > B532+1SD % > B532+1SD
% > B532+2SD % > B532+2SD
F532 % Sat. F532 % Sat.
Ratio of Medians (635/532) Ratio of Medians (635/532)
Ratio of Means (635/532) Ratio of Means (635/532)
Median of Ratios (635/532) Median of Ratios (635/532)
Mean of Ratios (635/532) Mean of Ratios (635/532)
Ratios SD (635/532) Ratios SD (635/532)
Rgn Ratio (635/532) Rgn Ratio (635/532)
Rgn R2 (635/532) Rgn R2 (635/532)
F Pixels F Pixels
B Pixels B Pixels
Circularity Circularity
Sum of Medians (635/532) Sum of Medians (635/532)
Sum of Means (635/532) Sum of Means (635/532)
VALUE Log2 ratio
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
F635 Total Intensity F635 Total Intensity
F532 Total Intensity F532 Total Intensity
SNR 635 SNR 635
SNR 532 SNR 532
Flags Spot Flags

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags
PB000000.00.0 2015 2018 898 44 132 132 172 145 84 95 94 0 1306 1342 558 41 118 118 139 107 76 96 95 0 1.585 1.541 1.531 1.479 2.418 1.816 0.561 120 558 100 3071 3110 0.664 1883 1188 1886 1224 242219 161073 12.731 11.243 Bad
PB000000.01.0 34807 35140 13159 37 142 142 195 277 142 100 99 0 6431 6469 2089 32 111 111 139 115 82 100 100 0 5.485 5.505 5.692 4.96 2.132 6.167 0.821 120 557 100 40985 41356 2.455 34665 6320 34998 6358 4216785 776257 126.155 55.043 Good
PB000001.00.0 6867 7295 3129 42 134 134 184 178 96 98 97 0 5681 6015 2527 42 127 127 148 118 79 99 98 0 1.212 1.216 1.31 1.171 3.194 1.284 0.636 120 541 100 12287 13049 0.278 6733 5554 7161 5888 875391 721753 39.949 49.72 Bad
PB000001.01.0 18365 19193 6732 35 146 146 186 162 87 100 100 0 5434 5322 1992 37 124 124 149 125 83 99 97 0 3.431 3.664 3.62 3.913 2.013 3.834 0.866 120 557 100 23529 24245 1.779 18219 5310 19047 5198 2303179 638654 117.327 41.384 Good
PB000001.03.0 36069 36980 12033 32 135 135 176 153 86 100 100 0 23734 23751 8499 35 127 127 144 102 70 100 100 0 1.522 1.56 1.53 1.614 2.264 1.608 0.812 120 540 100 59541 60469 0.606 35934 23607 36845 23624 4437561 2850086 240.549 231.441 Bad
PB000002.00.0 2258 2364 1047 44 142 142 176 145 82 97 96 0 2711 2643 933 35 101 101 125 101 80 97 96 0 0.811 0.874 0.828 0.854 2.891 0.9 0.653 120 540 100 4726 4764 -0.303 2116 2610 2222 2542 283648 317218 15.09 24.931 Good
PB000002.01.0 3829 4007 1388 34 146 146 179 157 87 100 99 0 3840 3851 1402 36 111 111 142 110 77 98 98 0 0.988 1.032 1.006 1.109 2.318 1.027 0.753 120 556 100 7412 7601 -0.018 3683 3729 3861 3740 480877 462112 24.382 33.718 Bad
PB000002.02.0 3403 3224 1374 42 148 148 185 160 86 95 92 0 3364 3393 1104 32 125 125 151 117 77 99 98 0 1.005 0.941 0.946 0.837 2.273 0.993 0.753 120 540 100 6494 6344 0.007 3255 3239 3076 3268 386910 407215 18.994 27.709 Good
PB000002.03.0 9629 10077 3917 38 137 137 175 156 89 100 100 0 8061 8420 3837 45 128 128 148 111 75 98 98 0 1.197 1.199 1.147 1.322 2.177 1.143 0.804 120 556 100 17425 18232 0.259 9492 7933 9940 8292 1209238 1010365 63.474 74.523 Good
PB000003.00.0 7954 8226 4185 50 148 148 186 181 97 95 94 0 6023 6435 2161 33 112 112 143 110 76 100 100 0 1.321 1.278 1.322 1.009 3.099 1.482 0.699 120 612 100 13717 14401 0.401 7806 5911 8078 6323 987104 772218 44.42 57.2 Good
PB000003.01.0 13942 13249 5014 37 131 131 173 155 89 97 95 0 10154 9952 2758 27 128 128 151 111 73 100 100 0 1.378 1.335 1.404 1.141 2.612 1.427 0.842 120 613 100 23837 22942 0.462 13811 10026 13118 9824 1589856 1194285 84.361 88.297 Bad
PB000003.02.0 1895 2037 890 43 134 134 167 142 85 99 99 0 1275 1340 610 45 114 114 134 99 73 96 95 0 1.517 1.552 1.509 1.52 2.709 1.722 0.572 120 556 100 2922 3129 0.601 1761 1161 1903 1226 244415 160771 13.169 12.182 Bad
PB000003.03.0 5793 6136 3345 54 144 144 185 162 87 98 95 0 5558 5925 2327 39 112 112 142 107 75 99 98 0 1.037 1.031 1.037 0.936 2.107 1.147 0.685 120 596 100 11095 11805 0.053 5649 5446 5992 5813 736379 710972 36.735 54.047 Good
PB000004.00.0 3942 3947 1364 34 165 165 195 159 81 99 99 0 1809 1754 723 41 133 133 150 108 72 96 94 0 2.254 2.333 2.275 2.527 1.96 2.453 0.721 120 595 100 5453 5403 1.172 3777 1676 3782 1621 473581 210463 23.597 14.852 Bad
PB000004.01.0 33648 34171 12201 35 139 139 191 199 104 100 100 0 23272 24269 10432 42 134 134 174 329 189 100 94 0 1.448 1.41 1.358 1.657 2.564 1.393 0.837 120 554 100 56647 58167 0.534 33509 23138 34032 24135 4100539 2912284 170.754 73.237 Good
PB000004.02.0 10312 10686 3755 35 136 136 176 153 86 100 100 0 5346 5352 2319 43 115 115 140 105 75 97 95 0 1.945 2.015 1.915 2.238 2.393 2.1 0.758 120 637 100 15407 15787 0.96 10176 5231 10550 5237 1282324 642237 68.693 49.638 Good
PB000004.03.0 4710 4835 1805 37 135 135 178 162 91 100 97 0 3614 3447 1476 42 122 122 142 102 71 95 92 0 1.31 1.414 1.315 1.577 2.513 1.415 0.731 120 541 100 8067 8025 0.39 4575 3492 4700 3325 580140 413692 28.747 32.402 Bad
PB000005.00.0 1670 1750 741 42 143 143 182 158 86 99 97 0 1155 1155 498 43 114 114 139 106 76 95 92 0 1.467 1.544 1.529 1.577 1.959 1.663 0.633 120 627 100 2568 2648 0.553 1527 1041 1607 1041 209963 138604 9.924 9.585 Good
PB000005.01.0 4839 4764 1815 38 122 122 157 136 86 100 99 0 4228 4022 1771 44 104 104 130 104 80 98 96 0 1.144 1.185 1.15 1.291 2.44 1.172 0.73 120 596 100 8841 8560 0.194 4717 4124 4642 3918 571659 482630 33.875 37.423 Bad
PB000005.03.0 10769 11099 4638 41 142 142 219 557 254 96 94 0 4094 4251 1657 38 122 122 146 109 74 99 99 0 2.675 2.654 2.81 2.481 2.457 3.041 0.728 120 541 100 14599 15086 1.42 10627 3972 10957 4129 1331853 510176 19.533 37.661 Good

Total number of rows: 5283

Table truncated, full table size 1187 Kbytes.




Supplementary data files not provided

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