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Sample GSM111873 Query DataSets for GSM111873
Status Public on Sep 22, 2006
Title P. berghei wt vs Dz L1
Sample type RNA
 
Channel 1
Source name Plasmodium berghei wt
Organism Plasmodium berghei
Characteristics genotype: wild type
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Plasmodium berghei mutant L1
Organism Plasmodium berghei
Characteristics genotype: mutant L1
Extracted molecule total RNA
Extraction protocol Mair et al., 2006
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol Axon
Description samples and hybridizations done with Agilent technologies kit
Data processing Axon GenePix
 
Submission date May 31, 2006
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL3824
Series (1)
GSE5889 Regulation of sexual development of Plasmodium by translational repression.

Data table header descriptions
ID_REF
F635 Median F635 Median
F635 Mean F635 Mean
F635 SD F635 SD
F635 CV F635 CV
B635 B635
B635 Median B635 Median
B635 Mean B635 Mean
B635 SD B635 SD
B635 CV B635 CV
% > B635+1SD % > B635+1SD
% > B635+2SD % > B635+2SD
F635 % Sat. F635 % Sat.
F532 Median F532 Median
F532 Mean F532 Mean
F532 SD F532 SD
F532 CV F532 CV
B532 B532
B532 Median B532 Median
B532 Mean B532 Mean
B532 SD B532 SD
B532 CV B532 CV
% > B532+1SD % > B532+1SD
% > B532+2SD % > B532+2SD
F532 % Sat. F532 % Sat.
Ratio of Medians (635/532) Ratio of Medians (635/532)
Ratio of Means (635/532) Ratio of Means (635/532)
Median of Ratios (635/532) Median of Ratios (635/532)
Mean of Ratios (635/532) Mean of Ratios (635/532)
Ratios SD (635/532) Ratios SD (635/532)
Rgn Ratio (635/532) Rgn Ratio (635/532)
Rgn R2 (635/532) Rgn R2 (635/532)
F Pixels F Pixels
B Pixels B Pixels
Circularity Circularity
Sum of Medians (635/532) Sum of Medians (635/532)
Sum of Means (635/532) Sum of Means (635/532)
VALUE Log2 Ratio
F635 Median - B635 F635 Median - B635
F532 Median - B532 F532 Median - B532
F635 Mean - B635 F635 Mean - B635
F532 Mean - B532 F532 Mean - B532
F635 Total Intensity F635 Total Intensity
F532 Total Intensity F532 Total Intensity
SNR 635 SNR 635
SNR 532 SNR 532
Flags Spot Flags

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags
PB000000.00.0 100 94 41 43 24 24 26 11 42 89 85 0 84 82 31 37 28 28 30 9 30 86 85 0 1.357 1.296 1.226 1.308 1.886 1.375 0.626 120 579 100 132 124 0.441 76 56 70 54 11301 9823 6.182 5.778 Bad
PB000000.01.0 1244 1195 625 52 26 26 27 7 25 96 94 0 305 304 168 55 27 27 29 10 34 92 87 0 4.381 4.22 4.143 4.404 1.879 4.253 0.921 120 555 100 1496 1446 2.131 1218 278 1169 277 143459 36451 166.857 27.5 Good
PB000001.00.0 165 166 67 40 26 26 28 10 35 93 90 0 178 176 67 38 28 28 30 9 30 93 91 0 0.927 0.946 0.914 0.9 1.684 0.961 0.822 120 556 100 289 288 -0.11 139 150 140 148 19946 21075 13.8 16.222 Bad
PB000001.01.0 521 512 203 39 27 27 29 23 79 95 95 0 214 208 85 40 28 28 30 9 30 95 90 0 2.656 2.694 2.734 2.844 1.893 2.746 0.867 120 584 100 680 665 1.409 494 186 485 180 61447 24932 21 19.778 Good
PB000001.03.0 751 747 316 42 25 25 27 7 25 100 99 0 650 673 276 41 28 28 30 10 33 99 98 0 1.167 1.119 1.116 1.067 1.592 1.13 0.935 120 540 100 1348 1367 0.223 726 622 722 645 89639 80791 102.857 64.3 Bad
PB000002.00.0 118 115 40 34 26 26 35 55 157 83 32 0 156 161 62 38 29 29 39 60 153 88 52 0 0.724 0.674 0.651 0.653 1.589 0.675 0.794 80 527 100 219 221 -0.465 92 127 89 132 9205 12909 1.455 2.033 Good
PB000002.01.0 117 123 53 43 25 25 27 7 25 94 91 0 132 130 53 40 27 27 29 8 27 91 89 0 0.876 0.951 0.899 0.965 1.894 0.972 0.777 120 527 100 197 201 -0.191 92 105 98 103 14815 15645 13.714 12.625 Bad
PB000002.02.0 257 246 79 32 26 26 28 8 28 97 96 0 349 330 118 35 28 28 30 10 33 98 95 0 0.72 0.728 0.727 0.763 1.56 0.7 0.898 120 557 100 552 522 -0.475 231 321 220 302 29472 39653 27.25 30 Good
PB000002.03.0 643 655 301 45 26 26 27 7 25 95 95 0 831 798 364 45 28 28 30 9 30 95 94 0 0.768 0.817 0.824 0.807 1.937 0.789 0.892 120 575 100 1420 1399 -0.38 617 803 629 770 78555 95800 89.714 85.333 Good
PB000003.00.0 272 258 100 38 26 26 27 6 22 97 95 0 320 325 128 39 28 28 30 9 30 98 96 0 0.842 0.781 0.806 0.754 2.106 0.772 0.852 120 571 100 538 529 -0.247 246 292 232 297 30995 39029 38.5 32.778 Good
PB000003.01.0 318 325 112 34 25 25 32 42 131 95 95 0 349 341 116 34 28 28 35 39 111 95 93 0 0.913 0.958 0.966 0.955 1.637 0.964 0.892 80 519 100 614 613 -0.132 293 321 300 313 25977 27242 6.976 7.846 Bad
PB000003.02.0 108 106 45 42 26 26 29 16 55 91 87 0 95 97 40 41 27 27 31 14 45 92 82 0 1.206 1.143 1.052 1.138 1.861 1.194 0.629 80 508 100 150 150 0.27 82 68 80 70 8445 7734 4.813 4.714 Bad
PB000003.03.0 223 215 100 46 26 26 28 17 60 87 86 0 320 302 129 42 28 28 30 11 36 94 92 0 0.675 0.69 0.669 0.67 1.695 0.682 0.857 120 522 100 489 463 -0.568 197 292 189 274 25745 36250 11 24.727 Good
PB000004.00.0 162 159 62 38 25 25 27 7 25 93 91 0 105 102 39 38 28 28 29 9 31 93 90 0 1.779 1.811 1.714 1.764 2.074 1.855 0.693 120 570 100 214 208 0.831 137 77 134 74 19027 12250 18.857 8.111 Bad
PB000004.01.0 816 813 396 48 25 25 27 7 25 96 92 0 761 756 394 52 28 28 30 10 33 94 90 0 1.079 1.082 1.055 1.046 1.825 1.059 0.915 120 556 100 1524 1516 0.11 791 733 788 728 97564 90767 112.286 72.6 Good
PB000004.02.0 877 929 436 46 25 25 27 7 25 99 99 0 710 752 360 47 28 28 29 9 31 100 100 0 1.249 1.249 1.243 1.154 1.953 1.258 0.902 120 742 100 1534 1628 0.321 852 682 904 724 111460 90242 128.857 80.333 Good
PB000004.03.0 105 108 53 49 25 25 26 7 26 86 84 0 121 116 53 45 27 27 29 9 31 89 86 0 0.851 0.933 0.995 0.876 2.12 0.93 0.685 120 557 100 174 172 -0.233 80 94 83 89 12941 13936 11.714 9.667 Bad
PB000005.00.0 70 72 31 43 25 25 27 7 25 91 85 0 73 74 28 37 27 27 29 9 31 89 82 0 0.978 1 1.04 1.032 1.98 1.026 0.515 120 557 100 91 94 -0.032 45 46 47 47 8672 8870 6.429 5 Good
PB000005.01.0 153 154 76 49 25 25 27 7 25 95 92 0 148 155 76 49 27 27 29 11 37 92 91 0 1.058 1.008 1.027 0.953 2.264 0.995 0.759 120 526 100 249 257 0.081 128 121 129 128 18504 18607 18.143 11.455 Bad
PB000005.03.0 296 298 143 47 25 25 27 7 25 91 90 0 147 142 63 44 28 28 29 9 31 92 88 0 2.277 2.395 2.375 2.122 2.199 2.458 0.799 120 557 100 390 387 1.187 271 119 273 114 35754 17020 38.714 12.556 Good

Total number of rows: 5283

Table truncated, full table size 1017 Kbytes.




Supplementary data files not provided

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