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GEO accession:
Sample GSM111873
Query DataSets for GSM111873
Status
Public on Sep 22, 2006
Title
P. berghei wt vs Dz L1
Sample type
RNA
Channel 1
Source name
Plasmodium berghei wt
Organism
Plasmodium berghei
Characteristics
genotype: wild type
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
Plasmodium berghei mutant L1
Organism
Plasmodium berghei
Characteristics
genotype: mutant L1
Extracted molecule
total RNA
Extraction protocol
Mair et al., 2006
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
Axon
Description
samples and hybridizations done with Agilent technologies kit
Data processing
Axon GenePix
Submission date
May 31, 2006
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
gdimopo1@jhu.edu
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL3824
Series (1)
GSE5889
Regulation of sexual development of Plasmodium by translational repression.
Data table header descriptions
ID_REF
F635 Median
F635 Median
F635 Mean
F635 Mean
F635 SD
F635 SD
F635 CV
F635 CV
B635
B635
B635 Median
B635 Median
B635 Mean
B635 Mean
B635 SD
B635 SD
B635 CV
B635 CV
% > B635+1SD
% > B635+1SD
% > B635+2SD
% > B635+2SD
F635 % Sat.
F635 % Sat.
F532 Median
F532 Median
F532 Mean
F532 Mean
F532 SD
F532 SD
F532 CV
F532 CV
B532
B532
B532 Median
B532 Median
B532 Mean
B532 Mean
B532 SD
B532 SD
B532 CV
B532 CV
% > B532+1SD
% > B532+1SD
% > B532+2SD
% > B532+2SD
F532 % Sat.
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Medians (635/532)
Ratio of Means (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Rgn R2 (635/532)
F Pixels
F Pixels
B Pixels
B Pixels
Circularity
Circularity
Sum of Medians (635/532)
Sum of Medians (635/532)
Sum of Means (635/532)
Sum of Means (635/532)
VALUE
Log2 Ratio
F635 Median - B635
F635 Median - B635
F532 Median - B532
F532 Median - B532
F635 Mean - B635
F635 Mean - B635
F532 Mean - B532
F532 Mean - B532
F635 Total Intensity
F635 Total Intensity
F532 Total Intensity
F532 Total Intensity
SNR 635
SNR 635
SNR 532
SNR 532
Flags
Spot Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
PB000000.00.0
100
94
41
43
24
24
26
11
42
89
85
0
84
82
31
37
28
28
30
9
30
86
85
0
1.357
1.296
1.226
1.308
1.886
1.375
0.626
120
579
100
132
124
0.441
76
56
70
54
11301
9823
6.182
5.778
Bad
PB000000.01.0
1244
1195
625
52
26
26
27
7
25
96
94
0
305
304
168
55
27
27
29
10
34
92
87
0
4.381
4.22
4.143
4.404
1.879
4.253
0.921
120
555
100
1496
1446
2.131
1218
278
1169
277
143459
36451
166.857
27.5
Good
PB000001.00.0
165
166
67
40
26
26
28
10
35
93
90
0
178
176
67
38
28
28
30
9
30
93
91
0
0.927
0.946
0.914
0.9
1.684
0.961
0.822
120
556
100
289
288
-0.11
139
150
140
148
19946
21075
13.8
16.222
Bad
PB000001.01.0
521
512
203
39
27
27
29
23
79
95
95
0
214
208
85
40
28
28
30
9
30
95
90
0
2.656
2.694
2.734
2.844
1.893
2.746
0.867
120
584
100
680
665
1.409
494
186
485
180
61447
24932
21
19.778
Good
PB000001.03.0
751
747
316
42
25
25
27
7
25
100
99
0
650
673
276
41
28
28
30
10
33
99
98
0
1.167
1.119
1.116
1.067
1.592
1.13
0.935
120
540
100
1348
1367
0.223
726
622
722
645
89639
80791
102.857
64.3
Bad
PB000002.00.0
118
115
40
34
26
26
35
55
157
83
32
0
156
161
62
38
29
29
39
60
153
88
52
0
0.724
0.674
0.651
0.653
1.589
0.675
0.794
80
527
100
219
221
-0.465
92
127
89
132
9205
12909
1.455
2.033
Good
PB000002.01.0
117
123
53
43
25
25
27
7
25
94
91
0
132
130
53
40
27
27
29
8
27
91
89
0
0.876
0.951
0.899
0.965
1.894
0.972
0.777
120
527
100
197
201
-0.191
92
105
98
103
14815
15645
13.714
12.625
Bad
PB000002.02.0
257
246
79
32
26
26
28
8
28
97
96
0
349
330
118
35
28
28
30
10
33
98
95
0
0.72
0.728
0.727
0.763
1.56
0.7
0.898
120
557
100
552
522
-0.475
231
321
220
302
29472
39653
27.25
30
Good
PB000002.03.0
643
655
301
45
26
26
27
7
25
95
95
0
831
798
364
45
28
28
30
9
30
95
94
0
0.768
0.817
0.824
0.807
1.937
0.789
0.892
120
575
100
1420
1399
-0.38
617
803
629
770
78555
95800
89.714
85.333
Good
PB000003.00.0
272
258
100
38
26
26
27
6
22
97
95
0
320
325
128
39
28
28
30
9
30
98
96
0
0.842
0.781
0.806
0.754
2.106
0.772
0.852
120
571
100
538
529
-0.247
246
292
232
297
30995
39029
38.5
32.778
Good
PB000003.01.0
318
325
112
34
25
25
32
42
131
95
95
0
349
341
116
34
28
28
35
39
111
95
93
0
0.913
0.958
0.966
0.955
1.637
0.964
0.892
80
519
100
614
613
-0.132
293
321
300
313
25977
27242
6.976
7.846
Bad
PB000003.02.0
108
106
45
42
26
26
29
16
55
91
87
0
95
97
40
41
27
27
31
14
45
92
82
0
1.206
1.143
1.052
1.138
1.861
1.194
0.629
80
508
100
150
150
0.27
82
68
80
70
8445
7734
4.813
4.714
Bad
PB000003.03.0
223
215
100
46
26
26
28
17
60
87
86
0
320
302
129
42
28
28
30
11
36
94
92
0
0.675
0.69
0.669
0.67
1.695
0.682
0.857
120
522
100
489
463
-0.568
197
292
189
274
25745
36250
11
24.727
Good
PB000004.00.0
162
159
62
38
25
25
27
7
25
93
91
0
105
102
39
38
28
28
29
9
31
93
90
0
1.779
1.811
1.714
1.764
2.074
1.855
0.693
120
570
100
214
208
0.831
137
77
134
74
19027
12250
18.857
8.111
Bad
PB000004.01.0
816
813
396
48
25
25
27
7
25
96
92
0
761
756
394
52
28
28
30
10
33
94
90
0
1.079
1.082
1.055
1.046
1.825
1.059
0.915
120
556
100
1524
1516
0.11
791
733
788
728
97564
90767
112.286
72.6
Good
PB000004.02.0
877
929
436
46
25
25
27
7
25
99
99
0
710
752
360
47
28
28
29
9
31
100
100
0
1.249
1.249
1.243
1.154
1.953
1.258
0.902
120
742
100
1534
1628
0.321
852
682
904
724
111460
90242
128.857
80.333
Good
PB000004.03.0
105
108
53
49
25
25
26
7
26
86
84
0
121
116
53
45
27
27
29
9
31
89
86
0
0.851
0.933
0.995
0.876
2.12
0.93
0.685
120
557
100
174
172
-0.233
80
94
83
89
12941
13936
11.714
9.667
Bad
PB000005.00.0
70
72
31
43
25
25
27
7
25
91
85
0
73
74
28
37
27
27
29
9
31
89
82
0
0.978
1
1.04
1.032
1.98
1.026
0.515
120
557
100
91
94
-0.032
45
46
47
47
8672
8870
6.429
5
Good
PB000005.01.0
153
154
76
49
25
25
27
7
25
95
92
0
148
155
76
49
27
27
29
11
37
92
91
0
1.058
1.008
1.027
0.953
2.264
0.995
0.759
120
526
100
249
257
0.081
128
121
129
128
18504
18607
18.143
11.455
Bad
PB000005.03.0
296
298
143
47
25
25
27
7
25
91
90
0
147
142
63
44
28
28
29
9
31
92
88
0
2.277
2.395
2.375
2.122
2.199
2.458
0.799
120
557
100
390
387
1.187
271
119
273
114
35754
17020
38.714
12.556
Good
Total number of rows:
5283
Table truncated, full table size
1017 Kbytes
.
Supplementary data files not provided
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