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Sample GSM111891 Query DataSets for GSM111891
Status Public on Jun 03, 2006
Title corn oil control, biological rep3a
Sample type RNA
 
Source name Rattus, adult liver
Organism Rattus norvegicus
Characteristics Sprague-Dawley, 150-200 g
Treatment protocol After an overnight fast, animal received a single intraperitoneal dose of corn oil and sacrificed 8 h later.
Extracted molecule total RNA
Extraction protocol RNeasy kit, DNase I treatment on column, following manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, cRNA were hybridized at 45c for 16 h using a Affymetrix GeneChip Hybridization Oven 640
Scan protocol Affymetrix GeneChip Scanner 3000
Description Gene expression data from adult rat liver; corn oil-control; 8 h treatment
Data processing Affymetrix Microarray Analysis Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date May 31, 2006
Last update date Jun 02, 2006
Contact name Linda C Quattrochi
E-mail(s) linda.quattrochi@uchsc.edu
Phone 303-315-3522
Organization name University of Colorado at Denver and Health Sciences
Department Medicine
Lab Quattrochi
Street address 4200 E. 9th Ave, B146
City Denver
State/province CO
ZIP/Postal code 80262
Country USA
 
Platform ID GPL341
Series (1)
GSE4959 Expression data from adult Rattus liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no-call (NC).
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1367452_at 10.6873226736182 P 0.00167287722066533
1367453_at 11.3742686914813 P 0.00167287722066533
1367454_at 10.7247166126890 P 0.00221961024320294
1367455_at 11.9679372852243 P 0.00167287722066533
1367456_at 12.4977908208624 P 0.00167287722066533
1367457_at 9.98721654197726 P 0.00382292568622066
1367458_at 10.2641200255781 P 0.0049627730509202
1367459_at 12.9124658925536 P 0.00167287722066533
1367460_at 11.5183500339863 P 0.00167287722066533
1367461_at 10.9646838194274 P 0.00167287722066533
1367462_at 11.0384050924898 P 0.0049627730509202
1367463_at 11.8923115408878 P 0.00167287722066533
1367464_at 10.114530700079 P 0.00167287722066533
1367465_at 10.9671174750664 P 0.00167287722066533
1367466_at 11.2154139258640 P 0.00167287722066533
1367467_at 11.4944213752641 P 0.00221961024320294
1367468_at 10.8020190450665 P 0.00221961024320294
1367469_at 11.5270425595760 P 0.00167287722066533
1367470_at 11.8899504012719 P 0.00167287722066533
1367471_at 9.67032354814619 P 0.00167287722066533

Total number of rows: 15923

Table truncated, full table size 761 Kbytes.




Supplementary data files not provided
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