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Sample GSM115756 Query DataSets for GSM115756
Status Public on Aug 28, 2006
Title Hoxb1-IRES-tauGFP E10.5, rep 1
Sample type RNA
 
Source name Hoxb1-IRES-tauGFP mouse embryos, rhombomere 4
Organism Mus musculus
Characteristics FACS-sorted GFP-positive cells from hindbrains of E10.5 mouse embryos with normal Hoxb1 gene co-expressing tauGFP through the IRES element.
Extracted molecule total RNA
Label biotin
 
Description Comparison of gene expression profiles in rhombomere 4 of E10.5 mouse embryos expressing either normal endogenous Hox-B1 protein or the paralogous Hox-A1 protein from the Hoxb1 locus.
Data processing Bioconductor affy package
 
Submission date Jun 21, 2006
Last update date Aug 28, 2018
Contact name Petr Tvrdik
E-mail(s) petr.tvrdik@genetics.utah.edu
Phone (801) 581-7097
Organization name University of Utah
Department Human Genetics
Lab Capecchi Lab
Street address 15 N 2030 E
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platform ID GPL1261
Series (1)
GSE5124 Hoxb1 gene expressing Hox-A1 protein: Altered transcriptional profile in rhombomere 4 at E10.5
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no-call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-TrpnX-M_at 9.847236324 A 0.603115526
AFFX-TrpnX-5_at 16.51929121 A 0.78355609
AFFX-TrpnX-3_at 6.475962327 A 0.631606397
AFFX-TransRecMur/X57349_M_at 71.43139768 A 0.123489993
AFFX-TransRecMur/X57349_5_at 19.77112762 A 0.485104653
AFFX-TransRecMur/X57349_3_at 219.3094635 P 0.000194243
AFFX-ThrX-M_at 13.03469672 A 0.834222819
AFFX-ThrX-5_at 7.72236239 A 0.588650122
AFFX-ThrX-3_at 57.9331046 A 0.440625818
AFFX-r2-P1-cre-5_at 59306.46734 P 0.001641799
AFFX-r2-P1-cre-3_at 68761.07163 P 0.001641799
AFFX-r2-Ec-bioD-5_at 21157.13838 P 0.001641799
AFFX-r2-Ec-bioD-3_at 22752.40232 P 0.001641799
AFFX-r2-Ec-bioC-5_at 6781.903537 P 0.001641799
AFFX-r2-Ec-bioC-3_at 6842.226322 P 0.001641799
AFFX-r2-Ec-bioB-M_at 4365.009008 P 0.001641799
AFFX-r2-Ec-bioB-5_at 2984.277957 P 0.001641799
AFFX-r2-Ec-bioB-3_at 4364.047548 P 0.001641799
AFFX-r2-Bs-thr-M_s_at 5.309402315 A 0.733558034
AFFX-r2-Bs-thr-5_s_at 71.31478586 M 0.045260595

Total number of rows: 45101

Table truncated, full table size 1634 Kbytes.




Supplementary file Size Download File type/resource
GSM115756.CEL.gz 5.9 Mb (ftp)(http) CEL

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