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Sample GSM1168485 Query DataSets for GSM1168485
Status Public on Jun 19, 2014
Title Leukocyte_child_affected_N9
Sample type genomic
 
Source name Leukocyte peripheral blood N9
Organism Homo sapiens
Characteristics tissue: Leukocyte peripheral blood
disease status: affected
gender: male
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from leukocyte obtained from peripheral blood using the Wizard Kit. DNA quality and quantity was assessed using both Nanodrop Spectrophotometer, PicoGreen and agarose gel electrophoresis.
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations (GeneChip Fluidics Station 450), and scanned using Affymetrix scanner GCS3000-7G.
Description Hybridized to 250K_Nsp
Data processing Genotype Call (SNP call): AA, AB, BB, and NoCall;
 
Submission date Jun 19, 2013
Last update date Jun 19, 2014
Contact name Anne Philippi
E-mail(s) anne.philippi@inserm.fr
Organization name INSERM
Lab U740
Street address 10 avenue de Verdun
City PARIS
ZIP/Postal code 75010
Country France
 
Platform ID GPL3718
Series (1)
GSE48099 Loss of soluble guanylate cyclase, the major nitric oxide receptor, leads to moyamoya and achalasia.

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, and NoCall;

Data table
ID_REF VALUE
SNP_A-1886933 AB
SNP_A-1902458 AA
SNP_A-2131660 AB
SNP_A-4221087 AA
SNP_A-1884606 AA
SNP_A-2235839 AB
SNP_A-2218153 AA
SNP_A-1919019 AB
SNP_A-1815933 BB
SNP_A-2115098 AB
SNP_A-2264565 BB
SNP_A-1788728 BB
SNP_A-4218776 AA
SNP_A-2082194 AA
SNP_A-2135694 BB
SNP_A-4220764 BB
SNP_A-1796345 AB
SNP_A-1789472 AB
SNP_A-1934233 AB
SNP_A-4207031 BB

Total number of rows: 262217

Table truncated, full table size 4389 Kbytes.




Supplementary file Size Download File type/resource
GSM1168485_ETR_N9_Mapping250K_NSP.CEL.gz 25.1 Mb (ftp)(http) CEL
GSM1168485_ETR_N9_Mapping250K_NSP.brlmm.chp.gz 4.3 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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