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Sample GSM118627 Query DataSets for GSM118627
Status Public on Apr 01, 2010
Title Mouse liver WT_430B
Sample type RNA
 
Source name Livers from non-transgenic, wild-type mice provided with drinking water containing 25 micrograms/ml doxycycline plus 2.5% sucrose for 4 days
Organism Mus musculus
Characteristics genetic background: Hybrid B6SJL
gender: Male
age: 32-37 days old
tissue: Liver
genotype: wild type
Biomaterial provider Sarah Comerford, Robert Hammer lab, UT Southwestern
Extracted molecule total RNA
Extraction protocol RNA STAT-60 (Tel-Test)
Label standard Affymetrix protocol
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description NA
Data processing MAS 5.0, target value = 250, Tau = 0.015
 
Submission date Jul 06, 2006
Last update date Nov 23, 2009
Contact name Nikolaus Schultz
E-mail(s) schultz@cbio.mskcc.org
Phone 646-888-2604
Organization name Memorial Sloan-Kettering Cancer Center
Department Computational Biology Center
Street address 1275 York Ave, Box 460
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL340
Series (1)
GSE5242 Hepatic gene expression in transgenic mice with conditional liver-specific expression of the SV40 17kT/LT oncoproteins

Data table header descriptions
ID_REF
VALUE MAS 5 signal
ABS_CALL Detection call
DETECTION P-VALUE p-value detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1985.7 P 0.00039
AFFX-BioB-M_at 3452.3 P 0.000581
AFFX-BioB-3_at 1512.5 P 0.000169
AFFX-BioC-5_at 5308 P 0.00006
AFFX-BioC-3_at 3838.2 P 0.000052
AFFX-BioDn-5_at 3607 P 0.000052
AFFX-BioDn-3_at 16385.5 P 0.000052
AFFX-CreX-5_at 51117.6 P 0.000044
AFFX-CreX-3_at 66207.5 P 0.000044
AFFX-DapX-5_at 39.7 A 0.455413
AFFX-DapX-M_at 86.7 A 0.340661
AFFX-DapX-3_at 151.3 A 0.216524
AFFX-LysX-5_at 60.6 A 0.313723
AFFX-LysX-M_at 133 A 0.58862
AFFX-LysX-3_at 147.3 A 0.083592
AFFX-PheX-5_at 32.4 A 0.631562
AFFX-PheX-M_at 8.4 A 0.932339
AFFX-PheX-3_at 124.5 A 0.470238
AFFX-ThrX-5_at 21.4 A 0.9273
AFFX-ThrX-M_at 30.2 A 0.760937

Total number of rows: 22575

Table truncated, full table size 603 Kbytes.




Supplementary file Size Download File type/resource
GSM118627.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM118627.CHP.gz 5.7 Mb (ftp)(http) CHP
GSM118627.DAT.gz 34.5 Mb (ftp)(http) DAT
GSM118627.EXP.gz 500 b (ftp)(http) EXP
GSM118627.RPT.gz 1.2 Kb (ftp)(http) RPT
Processed data included within Sample table
Processed data provided as supplementary file

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