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Sample GSM1186774 Query DataSets for GSM1186774
Status Public on May 19, 2014
Title Kidney-10WK-8
Sample type RNA
 
Source name 10WK
Organism Ovis aries
Characteristics tissue: Kidney
age: postnatal 10 wk
Growth protocol All animal studies were approved by the NICHD/NIH Animal Care and Use Committee.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Data processing RMA by software Partek
 
Submission date Jul 16, 2013
Last update date May 19, 2014
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2112
Series (1)
GSE48916 Evidence that variation in adult body size among mammalian species is achieved by modulating the pace of a growth-regulating genetic program

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 11.3273
AFFX-BioB-5_at 10.8824
AFFX-BioB-M_at 11.1911
AFFX-BioC-3_at 11.141
AFFX-BioC-5_at 11.9221
AFFX-BioDn-3_at 13.818
AFFX-BioDn-5_at 12.3884
AFFX-Bt-A00196-1_s_at 5.05857
AFFX-Bt-AB076373-1_at 5.11737
AFFX-Bt-AF292559-1_at 3.19719
AFFX-Bt-AF292559-2_s_at 3.22278
AFFX-Bt-AF292559-3_s_at 3.43288
AFFX-Bt-AF292559-4_s_at 4.96505
AFFX-Bt-AF292560-1_s_at 3.8684
AFFX-Bt-AF298789-1_at 3.59366
AFFX-Bt-AF323980-1_at 2.92972
AFFX-Bt-AJ002682-1_s_at 3.14387
AFFX-Bt-AJ002682-2_s_at 5.67558
AFFX-Bt-AJ132968-1_at 4.60388
AFFX-Bt-AY056050-1_at 4.58467

Total number of rows: 24128

Table truncated, full table size 582 Kbytes.




Supplementary file Size Download File type/resource
GSM1186774_09-24-10_J.Baron22_AD_Bovine_Kidney_10WK_8.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM1186774_09-24-10_J.Baron22_AD_Bovine_Kidney_10WK_8.CHP.gz 3.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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