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Sample GSM1186777 Query DataSets for GSM1186777
Status Public on May 19, 2014
Title Kidney-10WK-11
Sample type RNA
 
Source name 10WK
Organism Ovis aries
Characteristics tissue: Kidney
age: postnatal 10 wk
Growth protocol All animal studies were approved by the NICHD/NIH Animal Care and Use Committee.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Data processing RMA by software Partek
 
Submission date Jul 16, 2013
Last update date May 19, 2014
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2112
Series (1)
GSE48916 Evidence that variation in adult body size among mammalian species is achieved by modulating the pace of a growth-regulating genetic program

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 11.3938
AFFX-BioB-5_at 10.9613
AFFX-BioB-M_at 11.3249
AFFX-BioC-3_at 11.1676
AFFX-BioC-5_at 12.0434
AFFX-BioDn-3_at 13.9212
AFFX-BioDn-5_at 12.2888
AFFX-Bt-A00196-1_s_at 4.85225
AFFX-Bt-AB076373-1_at 5.53701
AFFX-Bt-AF292559-1_at 3.50381
AFFX-Bt-AF292559-2_s_at 3.18245
AFFX-Bt-AF292559-3_s_at 3.30727
AFFX-Bt-AF292559-4_s_at 5.00307
AFFX-Bt-AF292560-1_s_at 3.68894
AFFX-Bt-AF298789-1_at 4.06239
AFFX-Bt-AF323980-1_at 2.96158
AFFX-Bt-AJ002682-1_s_at 3.32953
AFFX-Bt-AJ002682-2_s_at 5.68572
AFFX-Bt-AJ132968-1_at 4.41304
AFFX-Bt-AY056050-1_at 4.39937

Total number of rows: 24128

Table truncated, full table size 582 Kbytes.




Supplementary file Size Download File type/resource
GSM1186777_09-24-10_J.Baron25_AD_Bovine_Kidney_10WK_11.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM1186777_09-24-10_J.Baron25_AD_Bovine_Kidney_10WK_11.CHP.gz 3.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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