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Sample GSM1186778 Query DataSets for GSM1186778
Status Public on May 19, 2014
Title Kidney-AD-432
Sample type RNA
 
Source name AD
Organism Ovis aries
Characteristics tissue: Kidney
age: adult
Growth protocol All animal studies were approved by the NICHD/NIH Animal Care and Use Committee.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Data processing RMA by software Partek
 
Submission date Jul 16, 2013
Last update date May 19, 2014
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2112
Series (1)
GSE48916 Evidence that variation in adult body size among mammalian species is achieved by modulating the pace of a growth-regulating genetic program

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 11.4018
AFFX-BioB-5_at 10.9005
AFFX-BioB-M_at 11.2984
AFFX-BioC-3_at 11.1616
AFFX-BioC-5_at 11.9717
AFFX-BioDn-3_at 13.8729
AFFX-BioDn-5_at 12.361
AFFX-Bt-A00196-1_s_at 5.03988
AFFX-Bt-AB076373-1_at 5.39648
AFFX-Bt-AF292559-1_at 3.18351
AFFX-Bt-AF292559-2_s_at 2.89806
AFFX-Bt-AF292559-3_s_at 3.04981
AFFX-Bt-AF292559-4_s_at 4.83492
AFFX-Bt-AF292560-1_s_at 3.91871
AFFX-Bt-AF298789-1_at 3.7219
AFFX-Bt-AF323980-1_at 2.77346
AFFX-Bt-AJ002682-1_s_at 3.23814
AFFX-Bt-AJ002682-2_s_at 6.07024
AFFX-Bt-AJ132968-1_at 4.67585
AFFX-Bt-AY056050-1_at 4.44847

Total number of rows: 24128

Table truncated, full table size 582 Kbytes.




Supplementary file Size Download File type/resource
GSM1186778_09-24-10_J.Baron26_AD_Bovine_Kidney_AD_432.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM1186778_09-24-10_J.Baron26_AD_Bovine_Kidney_AD_432.CHP.gz 3.0 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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