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Sample GSM1186780 Query DataSets for GSM1186780
Status Public on May 19, 2014
Title Kidney-AD-441
Sample type RNA
 
Source name AD
Organism Ovis aries
Characteristics tissue: Kidney
age: adult
Growth protocol All animal studies were approved by the NICHD/NIH Animal Care and Use Committee.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Data processing RMA by software Partek
 
Submission date Jul 16, 2013
Last update date May 19, 2014
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2112
Series (1)
GSE48916 Evidence that variation in adult body size among mammalian species is achieved by modulating the pace of a growth-regulating genetic program

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 11.5355
AFFX-BioB-5_at 11.0634
AFFX-BioB-M_at 11.4841
AFFX-BioC-3_at 11.3886
AFFX-BioC-5_at 12.1329
AFFX-BioDn-3_at 13.9526
AFFX-BioDn-5_at 12.4257
AFFX-Bt-A00196-1_s_at 4.98636
AFFX-Bt-AB076373-1_at 5.28059
AFFX-Bt-AF292559-1_at 3.35272
AFFX-Bt-AF292559-2_s_at 3.09079
AFFX-Bt-AF292559-3_s_at 2.98848
AFFX-Bt-AF292559-4_s_at 5.01488
AFFX-Bt-AF292560-1_s_at 4.02063
AFFX-Bt-AF298789-1_at 3.63622
AFFX-Bt-AF323980-1_at 2.77346
AFFX-Bt-AJ002682-1_s_at 3.18137
AFFX-Bt-AJ002682-2_s_at 6.0216
AFFX-Bt-AJ132968-1_at 4.68247
AFFX-Bt-AY056050-1_at 4.95782

Total number of rows: 24128

Table truncated, full table size 582 Kbytes.




Supplementary file Size Download File type/resource
GSM1186780_09-24-10_J.Baron28_AD_Bovine_Kidney_AD_441.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM1186780_09-24-10_J.Baron28_AD_Bovine_Kidney_AD_441.CHP.gz 3.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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