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Sample GSM119924 Query DataSets for GSM119924
Status Public on Jul 13, 2006
Title 13254991_C.G.hepatop_4A_10012005
Sample type RNA
 
Source name MGMA_153
Organism Magallana gigas
Characteristics adult, hepatopancreas, aquacultured
Extracted molecule total RNA
Label CY3
 
Hybridization protocol 50% formamide. 2.4% SDS, 4X SSPE, 2.5X Denhardts
Description None
Data processing Ch1 Intensities read directly from the Microarray scanner.
 
Submission date Jul 12, 2006
Last update date Jul 12, 2006
Contact name MarineGenomics Project
E-mail(s) info@marinegenomics.org
Phone 843-762-8869
Fax 843-762-8847
URL http://www.marinegenomics.org
Organization name MarineGenomics.org
Lab HML
Street address 331 Fort Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Platform ID GPL3994
Series (1)
GSE5293 Crassostrea array characterization

Data table header descriptions
ID_REF Incremental generic ID Number
VALUE Ch1 Intensity raw intensity values
ch1 Background ch1 Background
ch1 Intensity Std Dev ch1 Intensity Std Dev
ch1 Background Std Dev ch1 Background Std Dev
ch1 Diameter ch1 Diameter of spot
ch1 Area ch1 Area of spot
ch1 Footprint ch1 Footprint of spot
ch1 Circularity ch1 Circularity of spot
ch1 Spot Uniformity ch1 Spot Uniformity
ch1 Bkg. Uniformity ch1 Bkg. Uniformity
ch1 Signal Noise Ratio ch1 Signal Noise Ratio
ch1 Confidence ch1 Confidence
Ignore Filter ignore filter indicator

Data table
ID_REF VALUE ch1 Background ch1 Intensity Std Dev ch1 Background Std Dev ch1 Diameter ch1 Area ch1 Footprint ch1 Circularity ch1 Spot Uniformity ch1 Bkg. Uniformity ch1 Signal Noise Ratio ch1 Confidence Ignore Filter
1 377.660004 184.782608 123.90696 22.70554 149.696426 10000 6.528154 0.953676 0.996323 0.999382 16.632945 1 1
2 340.459991 188.608688 126.75367 32.227512 150.544571 10000 7.672852 0.958401 0.996277 0.999107 10.564265 1 1
3 387.670013 198.652176 141.429504 23.211691 148.415115 10000 10.350291 0.962229 0.996117 0.999313 16.701498 1 1
4 1618.719971 200.260864 481.731171 41.36887 121.791801 10000 10.300733 0.908229 0.985619 0.998901 39.128939 1 1
5 1806.869995 198.304352 707.99469 51.851566 131.10582 10000 7.639433 0.911415 0.980835 0.99884 34.84697 1 1
6 12755.58984 224.739136 7750.582031 50.668457 120.21344 10000 6.528154 0.952368 0.768242 0.998642 251.746167 1 1
7 12983.33984 248.391312 6476.867676 70.990227 120.477936 10000 7.672852 0.960221 0.826485 0.998314 182.889116 1 1
8 17705.00977 217.82608 10440.42578 52.131523 126.911324 10000 10.350291 0.94957 0.732422 0.99855 339.621954 1 1
9 13446.25 288.086945 7943.38623 107.960815 116.992851 10000 10.300733 0.953796 0.805084 0.997375 124.547503 1 1
10 1187.52002 243.869568 389.545105 83.32756 137.504944 10000 7.639433 0.917665 0.988495 0.998108 14.251227 1 1
11 1218.930054 195 334.910431 39.656479 126.660263 10000 6.528154 0.972172 0.98996 0.998856 30.737223 1 1
12 4319.310059 195.956528 2177.267822 38.646976 126.156639 10000 7.672852 0.973765 0.939301 0.999023 111.763208 1 1
13 4356.169922 175.260864 1778.898315 22.559452 119.682693 10000 10.350291 0.950651 0.943489 0.999413 193.097328 1 1
14 1041.180054 206.91304 298.035767 42.398449 137.504944 10000 10.300733 0.925553 0.990211 0.998894 24.557032 1 1
15 1219.619995 199 408.292328 47.338242 136.808716 10000 7.639433 0.916405 0.98716 0.998795 25.763948 1 1
16 1242.089966 174.91304 347.212982 17.629812 129.395142 10000 6.528154 0.914401 0.990166 0.99955 70.453953 1 1
17 1405.599976 188 435.809814 25.380737 117.806259 10000 7.672852 0.931373 0.986221 0.999329 55.380581 1 1
18 2305.879883 181.217392 1204.989136 27.837118 130.619339 10000 10.350291 0.927431 0.961075 0.99929 82.83472 1 1
19 1846.609985 214.565216 1070.06604 38.201412 127.411957 10000 10.300733 0.91119 0.960487 0.998848 48.338789 1 1
20 1266.800049 211.17392 334.900787 48.681389 135.874863 10000 7.639433 0.881169 0.989983 0.99881 26.022266 1 1

Total number of rows: 30000

Table truncated, full table size 3348 Kbytes.




Supplementary data files not provided
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