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Platform GPL3994 Query DataSets for GPL3994
Status Public on Jul 13, 2006
Title Hollings Marine Laboratory Crassostrea cDNA Array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organisms Crassostrea virginica; Magallana gigas
Manufacturer Hollings Marine Laboratory, Genomics Core
Manufacture protocol contact spotting of cDNA clones using a Q-ArrayMax (Genetix) machine, baked for 2 h at 80C, and stored under vacuum until used
Support glass
Coating GAPS II amino-silane coated slides
 
 
Web link http://www.marinegenomics.org
Contributor(s) Jenny M, Gross PS, Cupit P, Warr G, Chapman RW
Submission date Jul 12, 2006
Last update date Mar 06, 2009
Contact name MarineGenomics Project
E-mail(s) info@marinegenomics.org
Phone 843-762-8869
Fax 843-762-8847
URL http://www.marinegenomics.org
Organization name MarineGenomics.org
Lab HML
Street address 331 Fort Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Samples (609) GSM119921, GSM119922, GSM119923, GSM119924, GSM119925, GSM119926 
Series (3)
GSE5293 Crassostrea array characterization
GSE12070 Transcriptome profiling of Pacific oyster Crassostrea gigas families that differ in tolerance of heat shock
GSE14793 A Transcriptomic Analysis of Land Use Impacts on the Oyster, Crassostrea virginica, in the South Atlantic Bight.

Data table header descriptions
ID Incremental generic ID Number
Array Row Microarray row index
Array Column Microarray column index
Row Microarray sub-block row index
Column Microarray sub-block column index
Name Gene name
X Location x coordinate
Y Location y coordinate
GB_ACC GenBank Accession number
SEQUENCE Genetic sequence of the spot
SPOT_ID Spot identification label

Data table
ID Array Row Array Column Row Column Name X Location Y Location GB_ACC SEQUENCE SPOT_ID
1 1 1 1 1 none 2030 2990 --none
2 1 1 1 2 none 2210 2970 --none
3 1 1 1 3 none 2390 2970 --none
4 1 1 1 4 CG_HCI_003 96 Plate B1 2550 2970 BQ426587 GTAGTGTTGCTCTACTTAATGTATTTCAATGAATTGAGAGAAAGAGAGAGCGAGAAAGAGGGGTGTTCATGCTAATTTGAGAGAGAATAAGCAAGAATAAGAGCAGATTTTGTTTTAAGTTGTCTTCAAGATATGCAAGTTTTACTACATGTTTTGTCTTGAGCTATAATGTATTATTTCCAATGTTAAAACTCATACACCAGCTGTGTGATAAATGTGGATTCTCTTGATGTAATGTTACTGTATCAATTAGAGACGTCTGGCTTCTCTCCGTTGGTTCTGTATGCAATTAACCAACTCTGTTAAATAAACATTAGATGATATT
5 1 1 1 5 CG_HCI_003 96 Plate B1 2730 2970 BQ426587 GTAGTGTTGCTCTACTTAATGTATTTCAATGAATTGAGAGAAAGAGAGAGCGAGAAAGAGGGGTGTTCATGCTAATTTGAGAGAGAATAAGCAAGAATAAGAGCAGATTTTGTTTTAAGTTGTCTTCAAGATATGCAAGTTTTACTACATGTTTTGTCTTGAGCTATAATGTATTATTTCCAATGTTAAAACTCATACACCAGCTGTGTGATAAATGTGGATTCTCTTGATGTAATGTTACTGTATCAATTAGAGACGTCTGGCTTCTCTCCGTTGGTTCTGTATGCAATTAACCAACTCTGTTAAATAAACATTAGATGATATT
6 1 1 1 6 CG_HCI_003 96 Plate B4 2910 2970 --NO INFORMATION
7 1 1 1 7 CG_HCI_003 96 Plate B4 3090 2970 --NO INFORMATION
8 1 1 1 8 CG_HCI_003 96 Plate B7 3270 2970 BQ426594 CAGTAAGGTCACACAGACGGTGCCGAAATGTTTCGAACCGTTTGCAACAGCTTTGGGAAGAAGCGAGGTGTGGCCCAGTTGTATGGAATTACCAGGTTGAGTGTTGGACAGGCAAGATGTAACACTACATCTGTACAGGCAACAGGCAGCAAGGGTGAAGCGCCACTCTGGAACGAGGAGGACGGGTGGGTGGTGCTGGACCCACCCTCGGACACCGCGGTGGTGGAGAGATTGGCCAAGCAGGAGGACTGGAGCAATGTCCACTACCTGACACGCCCCGACCTTTCCCANCAGGAGAAACAGTGGCTCAAGGAGGCCTAC
9 1 1 1 9 CG_HCI_003 96 Plate B7 3430 2970 BQ426594 CAGTAAGGTCACACAGACGGTGCCGAAATGTTTCGAACCGTTTGCAACAGCTTTGGGAAGAAGCGAGGTGTGGCCCAGTTGTATGGAATTACCAGGTTGAGTGTTGGACAGGCAAGATGTAACACTACATCTGTACAGGCAACAGGCAGCAAGGGTGAAGCGCCACTCTGGAACGAGGAGGACGGGTGGGTGGTGCTGGACCCACCCTCGGACACCGCGGTGGTGGAGAGATTGGCCAAGCAGGAGGACTGGAGCAATGTCCACTACCTGACACGCCCCGACCTTTCCCANCAGGAGAAACAGTGGCTCAAGGAGGCCTAC
10 1 1 1 10 CG_HCI_003 96 Plate B10 3610 2970 BQ426599 CTTCAAGCAGACCCATCGGAACTAAGACACTGGCCCTGGTATCATGGGAGTGTAAGTCGACAACATGCCGAGAAAACTCTGTCCCACAATGGCAGACTTCTTAGTGAGGGACTGTATGTCACAGCCTGGAGACTTTGTTTTAAGCTGTTGTTGGAAAAGTGCTCGTTTACATTTCATTATAAACTCTCAAGTGACCGAGAAGAACAATCATATTCCCGAGATTACCTTATTCGTTGGAGGACGATAGGTTTTGTTCCGTGCAGGACCTCGTTCAATTTTATATGTCCCACAGGAANTGTGTGACTAAAACATCCGGAGTGTTACTTTTGAATCCCATTGGAAGAACAATGCCGTTGAGTTACTACGACACCAAGTATGGCTTTGCCGGAGCAATTCCTTCCGGAGGTTTGCACGCTCAAGGTCACAGTCCTGGTGACAAAANAAGTCCGTACCACTCGCCTCACACATNTCCGAAAGNGAGTTCCCGTTNACAGA
11 1 1 1 11 CG_HCI_003 96 Plate B10 3790 2970 BQ426599 CTTCAAGCAGACCCATCGGAACTAAGACACTGGCCCTGGTATCATGGGAGTGTAAGTCGACAACATGCCGAGAAAACTCTGTCCCACAATGGCAGACTTCTTAGTGAGGGACTGTATGTCACAGCCTGGAGACTTTGTTTTAAGCTGTTGTTGGAAAAGTGCTCGTTTACATTTCATTATAAACTCTCAAGTGACCGAGAAGAACAATCATATTCCCGAGATTACCTTATTCGTTGGAGGACGATAGGTTTTGTTCCGTGCAGGACCTCGTTCAATTTTATATGTCCCACAGGAANTGTGTGACTAAAACATCCGGAGTGTTACTTTTGAATCCCATTGGAAGAACAATGCCGTTGAGTTACTACGACACCAAGTATGGCTTTGCCGGAGCAATTCCTTCCGGAGGTTTGCACGCTCAAGGTCACAGTCCTGGTGACAAAANAAGTCCGTACCACTCGCCTCACACATNTCCGAAAGNGAGTTCCCGTTNACAGA
12 1 1 1 12 CG_HCI_003 96 Plate D1 3970 2970 --NO INFORMATION
13 1 1 1 13 CG_HCI_003 96 Plate D1 4150 2970 --NO INFORMATION
14 1 1 1 14 CG_HCI_003 96 Plate D4 4310 2970 BQ426620 GAGAAAACAGCAATCTTATTGTGGCTGATAGTTTACGTGATGTCCACTTTTGTACTGGTCACAGTGGAAACAGCGTACAAGCTTTACTCAATAATTTCTCCTCGGCGTAATATGGAAGCCGACGATGATGTCGATAATGACTACAGAAAATACTATGCTACTTGATGCCATGCATGCCATGATACCACACCCTCAAAACATACAAGATCGAGACGCTCCTGACCCGAACCCGGATAAGGGGTCTACATGTACATGTGCTCAAAGGGTCACTTCATCTCCGACCGTTTCATCGTGCATATTTCGAGAACATGACATCGTGTCGGGTTTTTTTTACAATCAAGCTGATGTGATTTCTGAGGCAATGAAAGAGCCGTGCATATCAGAGAAGAAAAACCTGACAAACAAAAGTAGCGTGAATGCACTGATACTTTAGCAAAGATGTGAGTGAAAGAAGTGAAAAAGAAAACTGAATTCATCATTCTTTCTACTGTACACTTACTGCAGGACTAATTGCAGGAAATTGTCACCTATGGTTTCAGATTCAATAATTTATTTGATTTTTTATGAAGGAAAGGGGGAGAAAAAACTTTTACTCAAAATGTTGAATACATGTATGTGTTGTTTGCATCCATTGTTCTAAAGACATGCATACTTCCTTATGCCAGATTTTTAAAATTATTTTTAAAGATTCAGCTGACTTATTTNCAGAT
15 1 1 1 15 CG_HCI_003 96 Plate D4 4490 2970 BQ426620 GAGAAAACAGCAATCTTATTGTGGCTGATAGTTTACGTGATGTCCACTTTTGTACTGGTCACAGTGGAAACAGCGTACAAGCTTTACTCAATAATTTCTCCTCGGCGTAATATGGAAGCCGACGATGATGTCGATAATGACTACAGAAAATACTATGCTACTTGATGCCATGCATGCCATGATACCACACCCTCAAAACATACAAGATCGAGACGCTCCTGACCCGAACCCGGATAAGGGGTCTACATGTACATGTGCTCAAAGGGTCACTTCATCTCCGACCGTTTCATCGTGCATATTTCGAGAACATGACATCGTGTCGGGTTTTTTTTACAATCAAGCTGATGTGATTTCTGAGGCAATGAAAGAGCCGTGCATATCAGAGAAGAAAAACCTGACAAACAAAAGTAGCGTGAATGCACTGATACTTTAGCAAAGATGTGAGTGAAAGAAGTGAAAAAGAAAACTGAATTCATCATTCTTTCTACTGTACACTTACTGCAGGACTAATTGCAGGAAATTGTCACCTATGGTTTCAGATTCAATAATTTATTTGATTTTTTATGAAGGAAAGGGGGAGAAAAAACTTTTACTCAAAATGTTGAATACATGTATGTGTTGTTTGCATCCATTGTTCTAAAGACATGCATACTTCCTTATGCCAGATTTTTAAAATTATTTTTAAAGATTCAGCTGACTTATTTNCAGAT
16 1 1 1 16 CG_HCI_003 96 Plate D7 4670 2970 BQ426623 CACAGTTTGACAGTCACAGTTAATGCCAAGATGTATGTACATGTATTCCCGTGTGTGGCACTCATTTTGATCAGTATTCCCCTTACCCAGTCTTGCTGCGCACCGAGTGTGTTCCAAGGAACAGCAATGACATACNGGACNTTATTTCAGAGGGAAAGACGGCTTTCCAAGTACGTATATATGTATATGAATGATGCAATATACAAGCAAGCAGGTGTTTCGTAAGTTCAGTTCTTTTTTATACACTTATTGGGAAGAAAATTTAAAGTTTCGAATTGAATATTTTTAGAATATGCAGAAGTTTTACTATGACGAGGAAGAAAAAAAGGTTGCCAGAGTCACCACAAACATGATGGGACAACCGGTGCGCGACATTTTCGATTTTCCCGCCAAAAAGCGTTACGTCATCACCAATGGAACCGCGTGTAACGTCACAGATCTGAACGAGCCGTTCCAAAAGAGCTGTGTGTCTCCATCCGCAGTTTTCATGGGGTCAACAGTGCTAGGCAATACCGATGACAATATGAAAGTAGACAATTATCGCTTTAATATTACTCAGGGTCCCGTTACTATCGAGACTTCCTTCATGATCGCCCCGATGA
17 1 1 1 17 CG_HCI_003 96 Plate D7 4850 2970 BQ426623 CACAGTTTGACAGTCACAGTTAATGCCAAGATGTATGTACATGTATTCCCGTGTGTGGCACTCATTTTGATCAGTATTCCCCTTACCCAGTCTTGCTGCGCACCGAGTGTGTTCCAAGGAACAGCAATGACATACNGGACNTTATTTCAGAGGGAAAGACGGCTTTCCAAGTACGTATATATGTATATGAATGATGCAATATACAAGCAAGCAGGTGTTTCGTAAGTTCAGTTCTTTTTTATACACTTATTGGGAAGAAAATTTAAAGTTTCGAATTGAATATTTTTAGAATATGCAGAAGTTTTACTATGACGAGGAAGAAAAAAAGGTTGCCAGAGTCACCACAAACATGATGGGACAACCGGTGCGCGACATTTTCGATTTTCCCGCCAAAAAGCGTTACGTCATCACCAATGGAACCGCGTGTAACGTCACAGATCTGAACGAGCCGTTCCAAAAGAGCTGTGTGTCTCCATCCGCAGTTTTCATGGGGTCAACAGTGCTAGGCAATACCGATGACAATATGAAAGTAGACAATTATCGCTTTAATATTACTCAGGGTCCCGTTACTATCGAGACTTCCTTCATGATCGCCCCGATGA
18 1 1 1 18 CG_HCI_003 96 Plate D10 5030 2970 BQ426626 TAACCGCTAACTATGAAGGAAACTAACGCCCGTGGTAGGAGCTATACCAGCGTCCCTCGCGTTCAGAGGAGAGCAGGTGCCCGCACAGTGTCCGAAGGAGATCCATCTAGCGAGCCGATGGTCACCCAAGACTACAGCGAAGCCATGACTCCCCCCGAGAACTGCGAGGTATGGGCCTCATTCAACAACGTGCTGAGTATCTCCACCGACAGACTCGTTCACCGGGACCAACGCTTCCTGAACCACGATGGCAACAGGAACGCCGCGCACCTGTGATCGCCCGTCACGTGACTAGAACCGAGTTTTTTTGTGGCACCGGTGAAGGATTTTATTTTAACAGTGTCCAAAGAATGGTTCACATGTATTCTCGTGTCATATTGCCTGCCTGAACATTTCAGGAACATTGTGCCCCTCTGTGACGGTGGCGCGGCGCCTCGGGTTGGATAGAGACATGCGCAAACTTTTTTGGGCGATAATCACCTCTCGCATTTCCAGTGGACCGTTTATTGTCCACACACATTCAGATGTTATACGATTTAAGTTTCATATTGTACAAATGTTACATTGACGAATAAAATGATGGTTCAGACAAAAAAAA
19 1 1 1 19 CG_HCI_003 96 Plate D10 5190 2970 BQ426626 TAACCGCTAACTATGAAGGAAACTAACGCCCGTGGTAGGAGCTATACCAGCGTCCCTCGCGTTCAGAGGAGAGCAGGTGCCCGCACAGTGTCCGAAGGAGATCCATCTAGCGAGCCGATGGTCACCCAAGACTACAGCGAAGCCATGACTCCCCCCGAGAACTGCGAGGTATGGGCCTCATTCAACAACGTGCTGAGTATCTCCACCGACAGACTCGTTCACCGGGACCAACGCTTCCTGAACCACGATGGCAACAGGAACGCCGCGCACCTGTGATCGCCCGTCACGTGACTAGAACCGAGTTTTTTTGTGGCACCGGTGAAGGATTTTATTTTAACAGTGTCCAAAGAATGGTTCACATGTATTCTCGTGTCATATTGCCTGCCTGAACATTTCAGGAACATTGTGCCCCTCTGTGACGGTGGCGCGGCGCCTCGGGTTGGATAGAGACATGCGCAAACTTTTTTGGGCGATAATCACCTCTCGCATTTCCAGTGGACCGTTTATTGTCCACACACATTCAGATGTTATACGATTTAAGTTTCATATTGTACAAATGTTACATTGACGAATAAAATGATGGTTCAGACAAAAAAAA
20 1 1 1 20 CG_HCI_003 96 Plate F1 5370 2970 CX194428 TTTTTTTTTTTTTTTTTTAAATAAAAAAACGTAAATTAAAAATCTTGAAATTCATATTACGTTTGTTTGAAAACACAATACAAACGACCAGTTAATAGGGTCGGCTTAATAAAAAGAAAAAACGGGAAAATAGAAAACTTCCTTTCAAACATCTTATTAAATATATTTTCCCATCCATTTCATAGCAGGGGAATTATCCACTCAAGCTTCATCCGAACGCTGCTTATTTCACGCCGTTGCATTTGATGCTAGTGCTAAGGGGGAAAGGAACATTGACTCCACATGCCTTAGGAAGTCCAGCTGCCCGGCCAGCGTTAAAACCAAAGCCTAAGGCGCTCGCAGCATTTTTAAGGCAACAACAAGTTTGCTAACGGTCGGGAGTTGTACGGGCAATACTGTTAAGCTTACTAACACCGGTGCACCACGCTCTGGGAAGGGGTCCACCTTGGGTCAAGTACCCAATGCATGCCCCCCCGTTGGTGTTAACGGTGCCACAGCTCAAAGCCCCCTTTGATGTGATGGGACCTGCCACAATCATGCAGGCCAAAACCAAGCATGCCAATTTCACTAGACCGGCCATTTGTTTTTTCTCTTAGCGTTTTTGCGGATTTGCAAAAGTAAATGTGTGTAAT

Total number of rows: 30000

Table truncated, full table size 15933 Kbytes.




Download family Format
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Supplementary data files not provided

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