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Sample GSM1256357 Query DataSets for GSM1256357
Status Public on Nov 12, 2013
Title IWH_10/7/74|22
Sample type genomic
 
Source name blood
Organism Canis lupus familiaris
Characteristics breed: Irish Wolfhound
gender: male
tissue: blood
disease state: osteosarcoma-free
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from whole blood (QIAamp DNA Midi kit).
Label biotin
Label protocol Standard Illumina protocol for Infinium HD Beadchip
 
Hybridization protocol Standard Illumina protocol for Infinium HD Beadchip
Scan protocol Illumina iScan with Dual-Scanner Autoloader
Description Genomic DNA extracted from blood was genotyped using the Illumina CanineHD Genotyping BeadChip
Data processing Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
 
Submission date Oct 31, 2013
Last update date Nov 12, 2013
Contact name Elinor Karlsson
E-mail(s) elinor@broadinstitute.org
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL17481
Series (2)
GSE51973 Dataset #1 for genome-wide analysis of heritable dog osteosarcoma in 3 breeds
GSE52147 Genome-wide analysis of heritable dog osteosarcoma in 3 breeds

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio

Data table
ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
BICF2G630100019 BB 0.9546114 0.9833496 0.9798297 0.9987489 0.1913793
BICF2G630100032 AA 0.9509959 0.01535522 1.247354 0.00 0.3252068
BICF2G630100034 BB 0.9356893 0.9858476 1.225134 1 0.09476344
BICF2G630100043 AB 0.5009796 0.5990956 1.72832 0.4280026 0.3022749
BICF2G630100054 AA 0.9124273 0.03064706 0.4061548 0.01321183 -0.5273449
BICF2G630100063 BB 0.8382778 0.9602479 1.408345 0.9954961 0.02583217
BICF2G630100075 AA 0.9334902 0.02372447 0.7286391 0.00 0.2795624
BICF2G63010009 AA 0.8763191 0.08178336 0.9833909 0.01065089 -0.09535996
BICF2G630100090 BB 0.908348 0.9837309 1.120422 0.9964135 0.09283359
BICF2G630100094 BB 0.8999848 0.9990178 1.427103 1 0.06132142
BICF2G63010010 BB 0.8246811 0.9506693 0.9964503 0.9729652 0.1585827
BICF2G630100114 BB 0.9348937 0.9865373 1.008126 1 -0.139992
BICF2G630100129 AA 0.831773 0.03555233 1.146208 0.006244533 -0.2794708
BICF2G63010014 NC 0.00 0.5991008 0.8292817 0.5255037 0.3169857
BICF2G630100157 AB 0.8679626 0.4397702 1.626877 0.4958988 0.005141536
BICF2G63010018 AA 0.5590832 0.09788483 0.414451 0.04440497 -1.305652
BICF2G63010019 AA 0.8065763 0.05036288 0.8869824 0.00 0.104632
BICF2G630100197 AB 0.5555461 0.4761334 2.749131 0.4575506 0.1437538
BICF2G630100209 AB 0.9559737 0.5146394 1.47705 0.5301457 0.01990406
BICF2G630100251 BB 0.9100665 0.9685682 1.127466 0.9898788 0.08345871

Total number of rows: 173662

Table truncated, full table size 11384 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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