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Sample GSM126536 Query DataSets for GSM126536
Status Public on Oct 01, 2006
Title 3.5hvsRef
Sample type RNA
 
Channel 1
Source name 3.5 hour
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule total RNA
Extraction protocol Trizol total RNA extraction, Megaclear Ambion purification of total RNA, MICROBexpress Ambion Bacterial Messenger RNA extraction Kit"
Label Cy3
Label protocol Approximately 1.5ug of mRNA was processed to produce amino-allyl labelled cDNA
 
Channel 2
Source name Reference
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule total RNA
Extraction protocol Trizol total RNA extraction, Megaclear Ambion purification of total RNA, MICROBexpress Ambion Bacterial Messenger RNA extraction Kit"
Label Cy5
Label protocol Approximately 1.5ug of mRNA was processed to produce amino-allyl labelled cDNA
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 47 timed samples
Data processing GeneData Expressionist
 
Submission date Aug 10, 2006
Last update date Aug 14, 2006
Contact name Fiona Rodrigues
Organization name Genome Institute of Singapore
Department Cell and Medical Biology
Lab 4
Street address 60 Biopolis Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL4078
Series (1)
GSE5495 Genome-Wide Mapping of Growth Regulated Genes in Burkholderia pseudomallei

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; missing profiles are estimted using SVDImpute

Data table
ID_REF VALUE
159903 -0.329036
160003 -0.062255
160103 -0.464517
160203 -0.021075
160803 0.050274
161403 -0.006252
162103 0.082666
162203 0.050143
162403 0.318135
162503 0.129739
162603 -0.173551
163703 0.028545
164103 -0.039378
164603 0.025921
165503 0.128424
165603 -0.155855
166103 -0.698561
166203 0.046066
166403 0.015051
166903 0.006166

Total number of rows: 5289

Table truncated, full table size 88 Kbytes.




Supplementary file Size Download File type/resource
GSM126536.gpr.gz 1.3 Mb (ftp)(http) GPR

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