NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM126537 Query DataSets for GSM126537
Status Public on Oct 01, 2006
Title 4hvsRef
Sample type RNA
 
Channel 1
Source name 4 hour
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule total RNA
Extraction protocol Trizol total RNA extraction, Megaclear Ambion purification of total RNA, MICROBexpress Ambion Bacterial Messenger RNA extraction Kit"
Label Cy3
Label protocol Approximately 1.5ug of mRNA was processed to produce amino-allyl labelled cDNA
 
Channel 2
Source name Reference
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule total RNA
Extraction protocol Trizol total RNA extraction, Megaclear Ambion purification of total RNA, MICROBexpress Ambion Bacterial Messenger RNA extraction Kit"
Label Cy5
Label protocol Approximately 1.5ug of mRNA was processed to produce amino-allyl labelled cDNA
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 47 timed samples
Data processing GeneData Expressionist
 
Submission date Aug 10, 2006
Last update date Aug 14, 2006
Contact name Fiona Rodrigues
Organization name Genome Institute of Singapore
Department Cell and Medical Biology
Lab 4
Street address 60 Biopolis Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platform ID GPL4078
Series (1)
GSE5495 Genome-Wide Mapping of Growth Regulated Genes in Burkholderia pseudomallei

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; missing profiles are estimted using SVDImpute

Data table
ID_REF VALUE
159903 -0.313139
160003 -0.155942
160103 -0.365735
160203 -0.072169
160803 0.061609
161403 -0.013781
162103 0.058155
162203 -0.032495
162403 0.105488
162503 0.214308
162603 -0.166773
163703 0.056542
164103 0.058776
164603 -0.057026
165503 0.035725
165603 -0.166124
166103 -0.341143
166203 0.039908
166403 0.024036
166903 0.047242

Total number of rows: 5289

Table truncated, full table size 89 Kbytes.




Supplementary file Size Download File type/resource
GSM126537.gpr.gz 1.3 Mb (ftp)(http) GPR

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap