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Sample GSM126912 Query DataSets for GSM126912
Status Public on Aug 12, 2006
Title G4D_Sham_Rep4
Sample type RNA
 
Source name Cardiacmyocyte
Organism Mus musculus
Characteristics This allele contains a deletion of the second coding exon of Gata4, including the start codon and the Nterminal 46% of the coding region. The mice used in this study were all male and on a uniform F1 genetic background resulting from the cross of Gata4WT/Δex2 (abbreviated
G4D) mice, backcrossed for greater than 8 generations into C57BL6/J, to wild-type FVB/N mice. G4D progeny from this cross were present at weaning at the expected Mendelian ratio (104/218, 48%), survived normally to 18 months of age, and had no evidence of structural heart disease (0 out of 15 embryos examined histologically at E15.5-E18.5). Gata4WT/WT littermates (WT) from these crosses were used as controls.
Treatment protocol The ligature for aortic banding was sized by tying around a 27 gauge needle. The ligature was placed on the transverse aorta between the brachiocephalic trunk and the left common carotid artery. The identical procedure was used for sham operation, except that the aorta was not manipulated.
Extracted molecule total RNA
Label Biotin
 
Description An important event in the pathogenesis of heart failure is the development of pathological cardiac hypertrophy. In cultured cardiac cardiomyocytes, the transcription factor Gata4 is required for agonist-induced cardiomyocyte hypertrophy. We hypothesized that in the intact organism Gata4 is an important regulator of postnatal heart function and of the hypertrophic response of the heart to pathological stress. To test
this hypothesis, we studied mice heterozygous for deletion of the second exon of Gata4 (G4D). At baseline, G4D mice had mild systolic and diastolic dysfunction associated with reduced heart weight and decreased cardiomyocyte number. After transverse aortic constriction (TAC), G4D mice developed overt heart failure and eccentric cardiac
hypertrophy, associated with significantly increased fibrosis and cardiomyocyte apoptosis. Inhibition of apoptosis by overexpression of the insulin-like growth factor 1 receptor prevented TAC-induced heart failure in G4D mice. Unlike WT-TAC controls, G4D-TAC cardiomyocytes hypertrophied by increasing in length more than width. Gene expression profiling revealed upregulation of genes associated with apoptosis and
fibrosis, including members of the TGFβ pathway. Our data demonstrate that Gata4 is essential for cardiac function in the postnatal heart. After pressure overload, Gata4 regulates the pattern of cardiomyocyte hypertrophy and protects the heart from loadinduced failure.
Data processing PLIER algorithm
 
Submission date Aug 10, 2006
Last update date Aug 28, 2018
Contact name Sek Won Kong
E-mail(s) swkong@enders.tch.harvard.edu
Phone 617-919-2689
Organization name Boston Children's Hospital
Department Informatics Program
Lab EN137
Street address 300 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE5500 Gata4 is required for postnatal cardiac function and protection from pressure overload-induced heart failure
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Log2 transformed intensity using PLIER algorithm
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE The p-value associated with this test reflects the confidence of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1415670_at 7.763121572 P 0.001672877
1415671_at 8.494581333 P 0.001672877
1415672_at 8.778912106 P 0.00221961
1415673_at 5.420398252 P 0.003822926
1415674_a_at 7.670026851 P 0.00221961
1415675_at 6.247283625 P 0.010397582
1415676_a_at 10.08770224 P 0.001672877
1415677_at 6.815194123 P 0.001672877
1415678_at 9.581136872 P 0.001672877
1415679_at 8.838860626 P 0.004962773
1415680_at 7.824135379 P 0.025230236
1415681_at 8.625029188 P 0.001672877
1415682_at 6.788052914 P 0.001672877
1415683_at 9.419384623 P 0.001672877
1415684_at 6.881258563 P 0.001672877
1415685_at 8.223261044 P 0.001672877
1415686_at 8.698215597 P 0.001672877
1415687_a_at 11.46171914 P 0.001672877
1415688_at 10.12473813 P 0.001672877
1415689_s_at 6.615795975 P 0.001672877

Total number of rows: 45101

Table truncated, full table size 1638 Kbytes.




Supplementary file Size Download File type/resource
GSM126912.CEL.gz 6.3 Mb (ftp)(http) CEL

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