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Sample GSM127135 Query DataSets for GSM127135
Status Public on Feb 01, 2007
Title CASP7_6 antibody
Sample type protein
 
Source name specific primary antibody. Antibody description: Caspase-7/MCH-3, Batch number: 26, AbIDNumber: 78
Organism Homo sapiens
Characteristics Each of 176 specific primary antibodies was prescreened to give highest quality by western analysis.
Extracted molecule protein
Label Streptavidin-biotin complex
 
Hybridization protocol Each slide was washed manually with deionized water to remove urea. Then, in an Autostainer universal staining system (DAKO), it was blocked with I-block. Also in autostainer, it was incubated with strpetavidin-biotin complex, biotynyl tyramide(for amplification) for 15 min, streptavidin-peroxidase for 15 min, 3,3'-diaminobenzidine-tetrahydrochloride chromagen for 5 min. For detection of total protein, arrays were stained with SYPRO ruby protein blot stain.
Scan protocol ProteinChips were scanned with Perfection 1200S scanner (Epson America) with a 256-shade gray scale at 600 dots per inch. Total protein stained with SYPRO ruby was scanned with Fluoriamger SI (Amersham Pharmacia Biotech) at 100-um resolution.
Description Each array was incubated with a specific primary antibody. Enables comparison of protein-of-interest across all 60 NCI-60 cell lines. Experimental slide number: GBL00069
Data processing The data were analyzed with dose interpolation (DI) algorithm.
 
Submission date Aug 11, 2006
Last update date Jan 05, 2007
Contact name Uma T Shankavaram
E-mail(s) uma@mail.nih.gov
Phone 301-496-6718
Organization name NIH
Department NCI
Lab Radiation Oncology Branch
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL4081
Series (1)
GSE5501 Comparison of protein expression profiles in NCI-60 cell panel containing nine difererent cancer tissue types.

Data table header descriptions
ID_REF NCI60 cell line lysate on the platform
VALUE Adjusted DI25 values in log2 scale.
SIGNAL_RAW Signal intensity processed by DI25 algorithm. The values represent in log2 scale.
TotalProtein Intensity of total protein used for the adjustment of protein expression.

Data table
ID_REF VALUE SIGNAL_RAW TotalProtein
BT-549 (BR) -1.563221 1 2.563221
HS 578T(BR) -0.5806016 1 1.5806016
MCF-7 (BR) 1.14935806 3.8225 2.67314194
NCI ADR-RES(OV) -0.4573 2.3287 2.786
MDA-MB-231/ATCC (BR) 0.38640806 3.5862 3.19979194
MDA-MB435 (ME) 0.44599677 4.1467 3.70070323
MDA-N (ME) 0.31813871 4.1068 3.78866129
T-47D (BR) 1.9135629 4.9833 3.0697371
SF-268 (CNS) -0.2015597 2.7487 2.9502597
SF-295 (CNS) 1.15778548 3.6912 2.53341452
SF-539 (CNS) 1.75645645 4.2818 2.52534355
SNB-19 (CNS) 0.58869516 2.5884 1.99970484
SNB-75 (CNS) 0.8468371 3.6205 2.7736629
U251 (CNS) 0.99207097 3.3798 2.38772903
COLO 205 (CO) 0.61181452 5.1826 4.57078548
HCC-2998 (CO) 0.90820645 3.1379 2.22969355
HCT-116 (CO) 1.63771613 4.907 3.26928387
HCT-15 (CO) 1.08002419 4.4298 3.34977581
HT29 (CO) 0.95721613 3.9492 2.99198387
KM12 (CO) 1.10642419 4.9857 3.87927581

Total number of rows: 60

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided

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