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Sample GSM127195 Query DataSets for GSM127195
Status Public on Feb 01, 2007
Title FADD_9 antibody
Sample type protein
 
Source name specific primary antibody. Antibody description: FADD, Batch number: 26, AbIDNumber: 80
Organism Homo sapiens
Characteristics Each of 176 specific primary antibodies was prescreened to give highest quality by western analysis.
Extracted molecule protein
Label Streptavidin-biotin complex
 
Hybridization protocol Each slide was washed manually with deionized water to remove urea. Then, in an Autostainer universal staining system (DAKO), it was blocked with I-block. Also in autostainer, it was incubated with strpetavidin-biotin complex, biotynyl tyramide(for amplification) for 15 min, streptavidin-peroxidase for 15 min, 3,3'-diaminobenzidine-tetrahydrochloride chromagen for 5 min. For detection of total protein, arrays were stained with SYPRO ruby protein blot stain.
Scan protocol ProteinChips were scanned with Perfection 1200S scanner (Epson America) with a 256-shade gray scale at 600 dots per inch. Total protein stained with SYPRO ruby was scanned with Fluoriamger SI (Amersham Pharmacia Biotech) at 100-um resolution.
Description Each array was incubated with a specific primary antibody. Enables comparison of protein-of-interest across all 60 NCI-60 cell lines. Experimental slide number: GBL00070
Data processing The data were analyzed with dose interpolation (DI) algorithm.
 
Submission date Aug 11, 2006
Last update date Jan 05, 2007
Contact name Uma T Shankavaram
E-mail(s) uma@mail.nih.gov
Phone 301-496-6718
Organization name NIH
Department NCI
Lab Radiation Oncology Branch
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL4081
Series (1)
GSE5501 Comparison of protein expression profiles in NCI-60 cell panel containing nine difererent cancer tissue types.

Data table header descriptions
ID_REF NCI60 cell line lysate on the platform
VALUE Adjusted DI25 values in log2 scale.
SIGNAL_RAW Signal intensity processed by DI25 algorithm. The values represent in log2 scale.
TotalProtein Intensity of total protein used for the adjustment of protein expression.

Data table
ID_REF VALUE SIGNAL_RAW TotalProtein
BT-549 (BR) 0.72257903 3.2858 2.56322097
HS 578T(BR) 0.97819839 2.5588 1.58060161
MCF-7 (BR) 0.04625806 2.7194 2.67314194
NCI ADR-RES(OV) 0.2113 2.9973 2.786
MDA-MB-231/ATCC (BR) 1.22360806 4.4234 3.19979194
MDA-MB435 (ME) 1.05309677 4.7538 3.70070323
MDA-N (ME) 1.61083871 5.3995 3.78866129
T-47D (BR) 0.7920629 3.8618 3.0697371
SF-268 (CNS) 1.49254032 4.4428 2.95025968
SF-295 (CNS) 0.71958548 3.253 2.53341452
SF-539 (CNS) 1.08365645 3.609 2.52534355
SNB-19 (CNS) 1.31809516 3.3178 1.99970484
SNB-75 (CNS) 0.4310371 3.2047 2.7736629
U251 (CNS) 1.26407097 3.6518 2.38772903
COLO 205 (CO) 0.87841452 5.4492 4.57078548
HCC-2998 (CO) 0.87260645 3.1023 2.22969355
HCT-116 (CO) 0.14451613 3.4138 3.26928387
HCT-15 (CO) 0.85262419 4.2024 3.34977581
HT29 (CO) 0.71711613 3.7091 2.99198387
KM12 (CO) 0.07762419 3.9569 3.87927581

Total number of rows: 60

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided

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