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Sample GSM128496 Query DataSets for GSM128496
Status Public on Apr 30, 2007
Title 1583_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17361.5625 255.2696 G 181.5168 17440.5625 8349.0000 18192.0801 146 13.6342573165894 96.0823356776728 79.6583 79.0000 11.3882 124 255.2696
1002 1 708.5052 10.4173 G 8.5579 784.5052 877.0000 380.2809 95 10.9980792999268 91.6700693398247 76.5923 76.0000 10.4467 134 10.4173
1003 1 1.5632 0.0230 L 0.8440 77.5632 76.0000 13.0408 87 10.5248203277588 91.8963813176099 76.3105 76.0000 10.5976 196 0.0230
1004 1 3.3678 0.0495 L 0.8521 76.3678 75.0000 11.5262 87 10.5248203277588 89.6201978648636 74.0169 73.0000 11.0801 184 0.0495
1005 1 5.1765 0.0761 L 0.8777 77.1765 79.0000 11.9290 51 8.0582389831543 87.9290388658323 71.8913 72.0000 10.6194 94 0.0761
1006 1 12.9524 0.1904 L 0.9808 86.9524 89.0000 12.4019 42 7.3127326965332 88.6553605597638 73.5407 74.0000 9.7702 178 0.1904
1007 1 12.7941 0.1881 L 0.9533 86.7941 85.0000 13.2859 34 6.57952451705933 91.0485634452104 75.9447 74.0000 11.3657 187 0.1881
1008 1 17616.5859 259.0192 G 179.4575 17696.5859 6777.0000 19129.1016 159 14.2283201217651 98.611551519442 78.3750 80.0000 12.4077 124 259.0192
1009 1 472.0625 6.9408 G 6.2197 546.0625 609.0000 241.0392 96 11.0558128356934 87.7958438700898 74.9341 74.0000 9.1972 188 6.9408
1010 1 538.1099 7.9119 G 7.0178 612.1099 739.0000 284.5164 91 10.7640514373779 87.2223966641948 74.0563 74.0000 8.8149 166 7.9119
1011 1 61.3797 0.9025 G 1.5607 135.3797 135.0000 25.2608 79 10.0292530059814 86.7425376933456 73.5471 74.0000 8.4950 176 0.9025
1012 1 52.3971 0.7704 G 1.4075 125.3971 125.0000 21.9378 68 9.30485343933105 89.0924076884416 73.9451 73.0000 10.7283 188 0.7704
1013 1 34.8167 0.5119 G 1.2099 108.8167 105.0000 24.7713 60 8.74038791656494 89.9410146712516 73.4560 74.0000 10.6273 188 0.5119
1014 1 27.4902 0.4042 G 1.1436 101.4902 99.0000 15.9378 51 8.0582389831543 88.7455253354715 74.4011 74.0000 9.8304 188 0.4042
1015 1 19592.5059 288.0714 G 194.5882 19674.5059 10104.0000 20285.6465 170 14.7122640609741 101.108424272137 83.5500 82.0000 12.7389 124 288.0714
1016 1 12.8151 0.1884 L 0.9426 88.8151 86.0000 17.5887 121 12.4121704101563 94.223424402813 77.5694 76.0000 12.1490 224 0.1884
1017 1 7.4023 0.1088 L 0.9082 81.4023 81.0000 12.8371 87 10.5248203277588 89.6313924367652 74.5192 74.0000 10.4209 216 0.1088
1018 1 0.9259 0.0136 L 0.8396 76.9259 77.0000 13.9932 54 8.29185962677002 91.6166924020074 76.0083 76.0000 10.4111 124 0.0136
1019 1 8.6897 0.1278 L 0.9384 82.6897 80.0000 13.2564 29 6.07650756835938 88.1186114184851 74.3204 74.0000 9.4124 187 0.1278
1020 1 10.7222 0.1577 L 0.9462 87.7222 90.0000 11.7180 36 6.7702751159668 92.7090672523341 76.8791 77.0000 10.4727 188 0.1577

Total number of rows: 54359

Table truncated, full table size 6952 Kbytes.




Supplementary file Size Download File type/resource
GSM128496.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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