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Sample GSM128502 Query DataSets for GSM128502
Status Public on Mar 23, 2015
Title 1591_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12135.1670 117.8513 G 137.6281 12209.1670 3457.0000 13831.7510 219 16.698486328125 88.7113261885903 75.3114 74.0000 9.8076 236
1002 1 997.2762 9.6851 G 11.9596 1071.2762 1216.0000 520.9725 107 11.6720447540283 89.5746562747697 74.8111 74.0000 10.3831 186
1003 1 5.3929 0.0524 L 0.8490 86.3929 85.0000 13.5300 56 8.444016456604 101.759320806834 82.3167 81.0000 13.8395 124
1004 1 36.6842 0.3563 G 1.1895 114.6842 110.0000 16.5149 57 8.51907634735107 96.4158284007509 78.9364 78.0000 12.2772 179
1005 1 3.2692 0.0317 L 0.8680 78.2692 79.0000 11.1788 52 8.1368579864502 90.1679375810429 74.9492 75.0000 10.1120 122
1006 1 31.1143 0.3022 G 1.1896 105.1143 104.0000 13.8580 70 9.44069766998291 88.3620283283575 73.9602 74.0000 9.5747 182
1007 1 16.5581 0.1608 G 1.0143 92.5581 93.0000 14.0883 43 7.3992772102356 91.2501702639217 76.2597 76.0000 10.1668 187
1008 1 13040.5146 126.6436 G 138.6389 13118.5146 5155.0000 14089.0518 208 16.2737159729004 94.6236198990539 79.2711 78.0000 11.0824 233
1009 1 359.8511 3.4947 G 4.8983 433.8511 467.0000 156.4080 94 10.9400415420532 88.571347578707 74.3039 74.0000 9.7142 187
1010 1 692.3790 6.7241 G 8.5885 766.3790 853.0000 373.3831 95 10.9980792999268 89.2329683132287 75.8297 74.0000 10.1553 188
1011 1 98.8182 0.9597 G 1.9539 172.8182 170.0000 32.2066 88 10.5851345062256 88.4490414528178 74.7088 74.0000 9.6327 188
1012 1 276.5568 2.6858 G 3.9254 351.5568 380.0000 124.7378 88 10.5851345062256 89.5593431334177 75.1758 75.0000 9.7062 188
1013 1 44.9178 0.4362 G 1.3111 119.9178 119.0000 17.2355 73 9.64087581634521 91.4608073424424 75.5055 75.0000 10.9739 188
1014 1 25.7879 0.2504 G 1.1226 99.7879 98.0000 16.0137 66 9.16699600219727 88.887273334277 73.8508 74.0000 9.9248 187
1015 1 13756.0879 133.5930 G 146.0679 13835.0879 4613.0000 15248.8916 244 17.625846862793 94.7168448956533 79.2902 79.0000 10.4779 232
1016 1 176.8878 1.7179 G 2.6791 254.8878 263.0000 51.4440 100 11.2837915420532 95.1397943775261 79.3667 78.0000 11.4265 186
1017 1 24.9655 0.2425 G 1.0897 100.9655 100.0000 14.7285 58 8.59348011016846 92.6580342947139 76.0506 76.0000 11.1054 184
1018 1 13.0290 0.1265 G 1.0011 86.0290 87.0000 11.2068 69 9.37302112579346 85.934982847856 74.1197 73.0000 8.6233 121
1019 1 13.4211 0.1303 L 0.9926 87.4211 88.0000 11.3616 57 8.51907634735107 88.073416919745 75.4753 74.0000 9.3823 168
1020 1 25.2982 0.2457 G 1.0235 111.2982 112.0000 19.0373 57 8.51907634735107 108.73923741859 86.4286 86.0000 15.1595 167

Total number of rows: 54359

Table truncated, full table size 6604 Kbytes.




Supplementary file Size Download File type/resource
GSM128502.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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