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Sample GSM128506 Query DataSets for GSM128506
Status Public on Apr 30, 2007
Title 1676_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 23471.3926 243.1671 G 239.3889 23552.3926 10973.0000 24150.9883 203 16.0769290924072 98.3854639874038 81.3921 81.0000 11.5903 235 243.1671
1002 1 1251.2017 12.9626 G 13.4444 1331.2017 1664.0000 683.4827 126 12.6660251617432 99.0151103322815 80.8167 80.0000 12.6767 124 12.9626
1003 1 2.6981 0.0280 L 0.8220 86.6981 88.0000 14.5584 53 8.21472454071045 105.472665301264 85.1373 84.0000 14.3151 106 0.0280
1004 1 3.2989 0.0342 L 0.8650 83.2989 82.0000 13.7390 87 10.5248203277588 96.2986580906331 80.3646 80.0000 10.8658 200 0.0342
1005 1 55.3421 0.5734 I 1.3944 136.3421 100.0000 127.8262 38 6.95579624176025 97.7762476272351 81.5407 81.0000 11.1842 178 0.5734
1006 1 25.4889 0.2641 G 1.1007 103.4889 105.0000 18.0550 45 7.56939744949341 94.0204681032136 77.7035 78.0000 10.6803 178 0.2641
1007 1 25.8400 0.2677 G 1.1068 105.8400 104.0000 13.5735 75 9.77204990386963 95.6248804487373 80.1833 80.0000 10.4166 186 0.2677
1008 1 25080.5918 259.8386 G 254.3110 25162.5918 12137.0000 25231.6016 183 15.2644300460815 98.9441779855129 81.9648 82.0000 11.2961 235 259.8386
1009 1 367.3100 3.8054 G 4.5349 449.3100 493.0000 152.4601 102 11.396071434021 99.0789009783379 82.3425 82.0000 11.3859 187 3.8054
1010 1 1165.8000 12.0779 G 13.1111 1243.8000 1536.0000 713.4099 112 11.9416427612305 94.8659428775926 78.3000 78.0000 11.2440 124 12.0779
1011 1 84.1149 0.8714 G 1.7304 162.1149 162.0000 28.2548 87 10.5248203277588 93.6885176274803 78.5440 78.0000 10.4590 188 0.8714
1012 1 51.0270 0.5286 G 1.3821 127.0270 128.0000 17.5960 74 9.70668506622314 91.9056476205812 76.6374 76.0000 10.6038 188 0.5286
1013 1 34.9828 0.3624 G 1.1322 111.9828 111.0000 13.2528 58 8.59348011016846 98.9033590711599 78.8956 77.0000 14.6022 188 0.3624
1014 1 23.0217 0.2385 G 1.0829 101.0217 101.0000 15.2365 46 7.65303993225098 93.2844887598273 78.9231 78.0000 10.1897 188 0.2385
1015 1 24412.4395 252.9164 G 255.5157 24492.4395 11357.0000 25557.0469 193 15.6759443283081 95.8549349089868 80.9050 80.0000 10.5700 229 252.9164
1016 1 84.6234 0.8767 G 1.5376 167.6234 169.0000 28.7831 77 9.90148735046387 109.015881467786 83.5722 83.0000 17.3439 186 0.8767
1017 1 19.3261 0.2002 G 1.0193 95.3261 95.0000 15.4034 46 7.65303993225098 93.5227175735112 77.4286 76.0000 11.6818 188 0.2002
1018 1 13.0732 0.1354 L 0.9670 90.0732 87.0000 13.5492 41 7.22515201568604 93.1508715643777 78.4066 77.0000 10.7672 188 0.1354
1019 1 6.3871 0.0662 L 0.8784 87.3871 87.0000 14.7050 31 6.2825493812561 99.4833272331517 80.9653 81.0000 12.3222 179 0.0662
1020 1 22.0294 0.2282 L 0.9827 107.0294 105.0000 15.6440 34 6.57952451705933 108.914886341043 87.9045 85.0000 15.9433 184 0.2282

Total number of rows: 54359

Table truncated, full table size 6996 Kbytes.




Supplementary file Size Download File type/resource
GSM128506.txt.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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