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Sample GSM128530 Query DataSets for GSM128530
Status Public on Apr 30, 2007
Title 2509_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6307.4385 118.6564 G 55.7425 6405.4385 3660.0000 5999.4229 157 14.1385507583618 114.911121339745 97.6891 98.0000 11.2741 123 118.6564
1002 1 223.5059 4.2046 G 2.8617 320.5059 351.0000 94.6043 85 10.4031419754028 111.99780586468 95.9611 97.0000 9.9985 186 4.2046
1003 1 25.7231 0.4839 G 1.1010 117.7231 116.0000 10.5225 65 9.09728336334229 106.927426240929 92.7692 92.0000 9.9516 188 0.4839
1004 1 27.9333 0.5255 G 1.1144 120.9333 121.0000 12.1049 60 8.74038791656494 108.51585722099 94.2637 93.0000 10.3439 188 0.5255
1005 1 28.1724 0.5300 G 1.1248 122.1724 119.0000 13.8342 58 8.59348011016846 108.620746478446 94.4670 94.0000 9.7472 188 0.5300
1006 1 34.6735 0.6523 G 1.1387 130.6735 129.0000 14.0588 49 7.89865398406982 114.756513629848 97.0773 96.0000 12.5043 187 0.6523
1007 1 35.5970 0.6697 G 1.1859 129.5970 129.0000 14.0033 67 9.23618125915527 109.284924372307 94.7033 94.0000 10.1899 188 0.6697
1008 1 6380.9937 120.0402 G 56.5907 6478.9937 3590.0000 6251.8325 157 14.1385507583618 114.488613790207 97.0167 98.0000 10.9924 124 120.0402
1009 1 272.8409 5.1327 G 3.3576 366.8409 397.0000 123.8665 88 10.5851345062256 109.256147282269 95.3390 94.0000 10.1708 183 5.1327
1010 1 138.3766 2.6032 G 2.1650 231.3766 248.0000 62.8131 77 9.90148735046387 106.871712939271 93.1484 93.0000 9.2478 188 2.6032
1011 1 95.6076 1.7986 G 1.7047 190.6076 194.0000 32.4725 79 10.0292530059814 111.81165281957 94.2253 95.0000 11.2078 188 1.7986
1012 1 37.6833 0.7089 G 1.1961 131.6833 130.0000 14.0801 60 8.74038791656494 110.094817258768 93.8297 94.0000 10.7299 188 0.7089
1013 1 27.6032 0.5193 G 1.1206 120.6032 120.0000 10.2082 63 8.95623207092285 107.627745540523 92.7624 93.0000 9.7518 187 0.5193
1014 1 26.4035 0.4967 G 1.1106 119.4035 119.0000 10.4929 57 8.51907634735107 107.516332323107 93.0659 93.0000 9.6776 188 0.4967
1015 1 6392.2349 120.2516 G 59.5458 6486.2349 4367.0000 6153.6470 168 14.6254653930664 108.928497540772 94.0333 94.0000 9.9523 124 120.2516
1016 1 73.6933 1.3863 G 1.5323 164.6933 166.0000 24.3261 75 9.77204990386963 107.482965608819 91.9505 91.0000 10.9886 188 1.3863
1017 1 38.5733 0.7256 G 1.2225 131.5733 131.0000 15.6573 75 9.77204990386963 107.629432453462 92.6758 93.0000 9.7530 188 0.7256
1018 1 19.9344 0.3750 G 1.0556 113.9344 115.0000 11.9916 61 8.81292343139648 107.928232532503 93.8736 94.0000 9.2855 188 0.3750
1019 1 18.3585 0.3454 G 1.0261 112.3585 113.0000 12.3519 53 8.21472454071045 109.502722896566 94.6978 94.0000 10.3351 188 0.3454
1020 1 28.1449 0.5295 G 1.1158 122.1449 123.0000 15.0374 69 9.37302112579346 109.467353197427 94.9176 94.0000 10.3116 188 0.5295

Total number of rows: 54359

Table truncated, full table size 6943 Kbytes.




Supplementary file Size Download File type/resource
GSM128530.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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