NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128534 Query DataSets for GSM128534
Status Public on Apr 30, 2007
Title 2512_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6917.3379 147.0811 G 65.5834 7009.3379 4188.0000 6688.9766 144 13.5405502319336 106.876663288023 93.2333 92.0000 9.9178 124 147.0811
1002 1 325.2143 6.9149 G 3.9241 417.2143 479.0000 159.1513 84 10.3417663574219 106.322205590678 92.1593 92.0000 9.5481 188 6.9149
1003 1 26.2581 0.5583 G 1.1017 119.2581 115.0000 11.3350 62 8.88486671447754 108.246649919102 93.0549 93.0000 10.1644 188 0.5583
1004 1 32.0175 0.6808 G 1.1663 124.0175 124.0000 13.0552 57 8.51907634735107 106.330136994002 91.2203 92.0000 9.5534 183 0.6808
1005 1 25.5000 0.5422 G 1.1048 117.5000 115.0000 13.5163 50 7.97884559631348 106.353048315004 92.4066 92.0000 9.5687 188 0.5422
1006 1 32.4464 0.6899 G 1.1572 125.4464 124.0000 14.3675 56 8.444016456604 108.409261508893 92.7790 93.0000 10.2728 187 0.6899
1007 1 38.8387 0.8258 G 1.2222 132.8387 129.0000 17.7466 62 8.88486671447754 108.684261120336 93.6758 94.0000 9.7895 188 0.8258
1008 1 6938.2676 147.5262 G 64.9159 7031.2676 4324.0000 6563.6714 144 13.5405502319336 108.313473640614 93.6000 93.0000 10.2090 124 147.5262
1009 1 144.1125 3.0642 G 2.2078 236.1125 244.0000 54.1959 80 10.0925302505493 106.943754747434 92.3333 92.0000 9.9625 177 3.0642
1010 1 157.4789 3.3484 G 2.3394 249.4789 268.0000 66.7009 71 9.50789165496826 106.642839759073 92.4246 92.0000 9.7619 185 3.3484
1011 1 40.4861 0.8608 G 1.2608 132.4861 133.0000 18.2673 72 9.57461452484131 105.078189772762 92.3132 92.0000 8.7188 188 0.8608
1012 1 40.1935 0.8546 G 1.2382 131.1935 133.0000 14.9675 62 8.88486671447754 105.958440821217 92.6099 91.0000 9.9723 188 0.8546
1013 1 28.3030 0.6018 G 1.1281 120.3030 118.0000 12.0943 66 9.16699600219727 106.645434554464 91.0824 92.0000 9.7636 188 0.6018
1014 1 206.1625 4.3836 G 2.8063 298.1625 320.0000 89.6490 80 10.0925302505493 106.248728648141 91.9505 92.0000 9.4991 188 4.3836
1015 1 6777.4497 144.1067 G 64.7762 6869.4497 4560.0000 6609.1870 151 13.8657550811768 106.049027471449 92.1667 92.0000 9.3660 124 144.1067
1016 1 28.4545 0.6050 G 1.1473 120.4545 120.0000 13.2278 66 9.16699600219727 104.987942313287 91.8022 92.0000 8.6586 188 0.6050
1017 1 46.5278 0.9893 G 1.3038 139.5278 138.0000 16.8201 72 9.57461452484131 107.015554070503 92.4890 93.0000 9.3437 188 0.9893
1018 1 24.1111 0.5127 G 1.1011 116.1111 118.0000 10.9749 63 8.95623207092285 105.452931532454 92.2418 92.0000 8.9686 188 0.5127
1019 1 26.0615 0.5541 G 1.0992 120.0615 121.0000 13.2687 65 9.09728336334229 109.231229517433 94.0549 94.0000 10.1542 188 0.5541
1020 1 30.1452 0.6410 G 1.1231 122.1452 122.0000 11.8401 62 8.88486671447754 108.756311510097 93.6484 92.0000 11.1709 188 0.6410

Total number of rows: 54359

Table truncated, full table size 6938 Kbytes.




Supplementary file Size Download File type/resource
GSM128534.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap