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Sample GSM128547 Query DataSets for GSM128547
Status Public on Mar 23, 2015
Title 2775_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5376.3398 134.5614 G 50.2984 5469.3398 3008.0000 5163.2632 161 14.3175268173218 108.737781515236 93.0667 93.0000 10.4918 124
1002 1 170.1786 4.2593 G 2.4673 262.1786 276.0000 66.1089 84 10.3417663574219 106.260800411106 92.4231 92.0000 9.5072 188
1003 1 29.9841 0.7505 G 1.1478 119.9841 120.0000 11.8543 63 8.95623207092285 104.531862388472 90.4011 90.0000 9.6879 188
1004 1 28.5781 0.7153 G 1.1272 118.5781 118.0000 11.5120 64 9.02703380584717 105.193120172572 91.0440 90.0000 10.1287 188
1005 1 27.7538 0.6946 G 1.1305 116.7538 114.0000 17.3223 65 9.09728336334229 103.277425793378 89.2762 89.0000 9.5183 187
1006 1 30.7846 0.7705 G 1.1703 119.7846 117.0000 15.3307 65 9.09728336334229 102.356144468349 88.3516 89.0000 8.9041 188
1007 1 28.4394 0.7118 G 1.1227 118.4394 118.0000 13.0153 66 9.16699600219727 105.494558365299 92.4066 90.0000 10.3297 188
1008 1 5459.2686 136.6370 G 52.3646 5550.2686 3649.0000 5320.4014 162 14.3619222640991 105.992805451422 91.2500 91.0000 9.9952 124
1009 1 217.3882 5.4409 G 2.8913 308.3882 331.0000 83.4270 85 10.4031419754028 106.659411976967 90.6743 91.0000 10.4396 181
1010 1 114.2000 2.8582 G 1.9700 202.2000 209.0000 48.4096 75 9.77204990386963 102.638081627632 89.5198 88.0000 9.7587 183
1011 1 28.3582 0.7098 G 1.1463 117.3582 116.0000 13.7870 67 9.23618125915527 102.379014876838 89.5549 89.0000 8.9193 188
1012 1 35.5455 0.8896 G 1.1952 127.5455 124.0000 23.3103 66 9.16699600219727 106.717977689472 91.6374 92.0000 9.8120 188
1013 1 25.2903 0.6330 G 1.1048 115.2903 115.0000 13.3928 62 8.88486671447754 104.352129748459 91.1099 90.0000 9.5681 188
1014 1 28.2807 0.7078 G 1.1369 119.2807 119.0000 11.6691 57 8.51907634735107 104.916818268084 91.6978 91.0000 9.2779 188
1015 1 5918.6934 148.1357 G 56.6136 6009.6934 3872.0000 5615.8442 165 14.4942932128906 106.152839518701 91.5417 91.0000 10.1019 124
1016 1 29.5224 0.7389 G 1.1441 120.5224 121.0000 13.8987 67 9.23618125915527 105.344726371404 91.2210 91.0000 9.5632 187
1017 1 36.5522 0.9148 G 1.2128 127.5522 127.0000 16.9506 67 9.23618125915527 105.172442643886 91.3462 91.0000 9.4483 188
1018 1 26.7241 0.6689 G 1.1075 119.7241 120.0000 14.0219 58 8.59348011016846 108.103957824425 92.4560 93.0000 10.0693 188
1019 1 23.9853 0.6003 G 1.0879 117.9853 116.0000 18.0045 68 9.30485343933105 108.449605070941 93.3407 94.0000 9.6331 188
1020 1 28.0328 0.7016 G 1.1197 120.0328 119.0000 12.1480 61 8.81292343139648 107.200379015125 93.3516 92.0000 10.1336 188

Total number of rows: 54359

Table truncated, full table size 6546 Kbytes.




Supplementary file Size Download File type/resource
GSM128547.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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