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Sample GSM128550 Query DataSets for GSM128550
Status Public on Mar 23, 2015
Title 2776_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5848.6602 118.0778 G 55.8542 5940.6602 4593.0000 5392.4722 152 13.9115924835205 106.360085371726 91.8167 92.0000 9.5734 124
1002 1 226.9024 4.5809 G 3.0145 316.9024 339.0000 95.8433 82 10.2179079055786 105.127519317951 90.6923 90.0000 10.0850 188
1003 1 30.5556 0.6169 G 1.1044 124.5556 126.0000 18.3673 45 7.56939744949341 112.783484710106 93.9392 94.0000 12.5223 187
1004 1 29.9242 0.6041 G 1.1672 117.9242 117.0000 13.1129 66 9.16699600219727 101.033480699752 89.5030 88.0000 8.6890 171
1005 1 28.9677 0.5848 G 1.1432 116.9677 116.0000 13.4931 62 8.88486671447754 102.319480250248 88.6374 88.0000 9.5463 188
1006 1 35.6000 0.7187 G 1.1920 124.6000 121.0000 21.0636 60 8.74038791656494 104.53093952986 89.4615 89.0000 10.3540 188
1007 1 28.1846 0.5690 G 1.1493 118.1846 119.0000 13.0371 65 9.09728336334229 102.829256068808 90.5055 90.0000 8.5528 188
1008 1 6199.3169 125.1572 G 58.4901 6289.3169 4946.0000 5581.7749 144 13.5405502319336 107.527829846492 91.1750 90.0000 11.6852 124
1009 1 160.1646 3.2335 G 2.3681 250.1646 256.0000 60.5463 79 10.0292530059814 105.637335026324 90.2778 90.0000 10.4249 186
1010 1 151.3378 3.0553 G 2.3239 240.3378 258.0000 66.6017 74 9.70668506622314 103.420258880492 89.3681 89.0000 9.6135 188
1011 1 44.4429 0.8973 G 1.2995 132.4429 133.0000 16.9938 70 9.44069766998291 101.915150759058 88.7857 88.0000 9.2768 188
1012 1 35.5862 0.7184 G 1.2051 125.5862 125.0000 15.7393 58 8.59348011016846 104.215180610929 89.1209 90.0000 9.4768 188
1013 1 25.5882 0.5166 L 0.8728 115.5882 115.0000 18.1353 34 6.57952451705933 132.439668152455 93.0497 90.0000 28.2931 187
1014 1 23.9623 0.4838 G 1.0829 114.9623 112.0000 13.9459 53 8.21472454071045 106.157909516487 90.7802 91.0000 10.1053 188
1015 1 6337.6577 127.9501 G 61.1882 6427.6577 4912.0000 5786.1108 151 13.8657550811768 105.047403290875 90.8167 90.0000 10.0316 124
1016 1 35.2059 0.7108 G 1.1987 123.2059 121.0000 13.4717 68 9.30485343933105 102.785944047654 88.5824 88.0000 9.8573 188
1017 1 27.3594 0.5524 G 1.1441 114.3594 113.0000 10.2231 64 9.02703380584717 99.9579739617615 87.9890 87.0000 8.6386 188
1018 1 26.0172 0.5253 G 1.1176 114.0172 116.0000 11.8503 58 8.59348011016846 102.022882150885 88.8736 88.0000 9.3486 188
1019 1 32.8197 0.6626 G 1.1806 120.8197 115.0000 25.4542 61 8.81292343139648 102.336437460968 88.2418 88.0000 9.5576 188
1020 1 26.8485 0.5420 G 1.1223 113.8485 115.0000 13.3101 66 9.16699600219727 101.439840862409 87.6374 87.0000 9.6266 188

Total number of rows: 54359

Table truncated, full table size 6563 Kbytes.




Supplementary file Size Download File type/resource
GSM128550.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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