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Sample GSM128551 Query DataSets for GSM128551
Status Public on Mar 23, 2015
Title 2776_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5325.2012 113.0136 G 53.7500 5412.2012 3489.0000 5092.0122 166 14.5381488800049 100.692100533121 88.1417 87.0000 9.1281 124
1002 1 179.1176 3.8013 G 2.6811 263.1176 275.0000 77.5411 85 10.4031419754028 98.1393194655386 84.8791 84.0000 9.4262 188
1003 1 24.8800 0.5280 G 1.1033 109.8800 109.0000 13.3980 50 7.97884559631348 99.5941124371378 85.3022 85.0000 9.7294 188
1004 1 24.8772 0.5280 G 1.1021 111.8772 113.0000 10.7509 57 8.51907634735107 101.51520823463 86.0879 87.0000 9.6768 188
1005 1 21.0769 0.4473 G 1.0611 109.0769 111.0000 13.9750 52 8.1368579864502 102.792914303843 86.9835 88.0000 9.8619 188
1006 1 28.0656 0.5956 G 1.1391 112.0656 111.0000 12.4016 61 8.81292343139648 98.3815910334139 84.7253 84.0000 9.5877 188
1007 1 23.0313 0.4888 G 1.0848 109.0313 110.0000 14.1498 64 9.02703380584717 100.510300482386 86.1648 86.0000 9.6735 188
1008 1 5702.3828 121.0183 G 59.3178 5787.3828 4110.0000 5350.5581 164 14.4503040313721 97.5657296193051 84.8000 85.0000 8.3772 124
1009 1 174.7350 3.7083 G 2.6639 259.7350 276.0000 70.2498 83 10.2800235748291 97.5032359148873 85.6354 85.0000 8.3355 187
1010 1 123.3421 2.6176 G 2.1075 209.3421 221.0000 50.3939 76 9.83698177337646 99.3313928113503 86.7912 86.0000 8.8876 188
1011 1 33.3913 0.7086 G 1.1806 120.3913 120.0000 11.7809 69 9.37302112579346 101.975291035086 87.5879 87.0000 9.9835 188
1012 1 47.8475 1.0154 G 1.3212 134.8475 131.0000 29.2087 59 8.66724491119385 102.060832880555 87.5934 87.0000 10.0406 188
1013 1 22.1385 0.4698 G 1.0845 108.1385 110.0000 12.4021 65 9.09728336334229 99.7081442413296 86.1264 86.0000 9.1388 188
1014 1 22.5636 0.4789 G 1.0914 109.5636 109.0000 11.2392 55 8.36828422546387 100.385086428459 86.5879 87.0000 8.9234 188
1015 1 5727.6704 121.5550 G 57.1201 5815.6704 3847.0000 5442.0527 172 14.7985544204712 101.814844471787 87.6667 88.0000 9.2099 124
1016 1 47.5200 1.0085 G 1.3335 133.5200 134.0000 16.1389 75 9.77204990386963 100.125900894176 86.2143 86.0000 9.4173 188
1017 1 23.2500 0.4934 G 1.0811 110.2500 111.0000 14.8818 64 9.02703380584717 101.982480314613 87.6044 87.0000 9.9883 188
1018 1 17.8600 0.3790 G 1.0456 106.8600 108.0000 13.9700 50 7.97884559631348 102.198826774389 88.7088 89.0000 8.7992 188
1019 1 16.4375 0.3488 G 1.0126 105.4375 107.0000 12.7048 48 7.81764030456543 104.124433140779 90.0659 89.0000 10.0830 188
1020 1 23.7719 0.5045 G 1.0921 111.7719 112.0000 12.0176 57 8.51907634735107 102.348886231953 88.1923 88.0000 9.5659 188

Total number of rows: 54359

Table truncated, full table size 6551 Kbytes.




Supplementary file Size Download File type/resource
GSM128551.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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