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Sample GSM128553 Query DataSets for GSM128553
Status Public on Mar 23, 2015
Title 2789_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6140.9429 123.8807 G 59.2386 6231.9429 3724.0000 5850.0122 142 13.4461898803711 105.200681458387 91.5833 91.0000 9.4671 124
1002 1 228.8095 4.6158 G 2.9742 320.8095 349.0000 99.6007 84 10.3417663574219 107.863546309121 92.6758 92.0000 10.5757 188
1003 1 25.8889 0.5223 G 1.0249 118.8889 119.0000 17.1584 45 7.56939744949341 115.997348132923 94.1758 93.0000 15.3316 188
1004 1 23.1525 0.4671 G 1.0888 114.1525 116.0000 12.5466 59 8.66724491119385 104.846306990101 91.4195 91.0000 9.2309 180
1005 1 21.1818 0.4273 G 1.0653 111.1818 113.0000 9.9783 55 8.36828422546387 104.367748054786 89.7912 90.0000 9.5785 188
1006 1 28.1803 0.5685 G 1.1374 119.1803 118.0000 15.6724 61 8.81292343139648 104.782794424997 91.3591 91.0000 9.1885 187
1007 1 32.3088 0.6518 G 1.1635 123.3088 124.0000 12.5079 68 9.30485343933105 105.976589424403 91.5967 91.0000 9.9844 187
1008 1 6697.8604 135.1153 G 64.0413 6789.8604 5702.0000 6104.1851 138 13.2554540634155 106.023191277407 92.0917 92.0000 9.3488 124
1009 1 306.9881 6.1928 G 3.7082 399.9881 432.0000 137.0326 84 10.3417663574219 107.864908703225 92.3556 93.0000 9.9099 186
1010 1 168.6533 3.4022 G 2.4425 260.6533 280.0000 74.6736 75 9.77204990386963 106.717109274954 92.2034 92.0000 9.8114 183
1011 1 102.7848 2.0735 G 1.8235 194.7848 198.0000 35.9387 79 10.0292530059814 106.818440405747 91.8736 92.0000 9.8790 188
1012 1 30.0526 0.6062 G 1.1539 120.0526 121.0000 13.6580 57 8.51907634735107 104.044629054612 90.8895 90.0000 9.3631 187
1013 1 27.9552 0.5639 G 1.1210 119.9552 119.0000 15.1248 67 9.23618125915527 107.005919550852 92.2333 92.0000 10.0039 186
1014 1 79.8243 1.6103 G 1.5538 172.8243 171.0000 25.4831 74 9.70668506622314 111.229611338863 93.3407 93.0000 12.1531 188
1015 1 6401.7202 129.1413 G 59.7688 6495.7202 4826.0000 6181.4819 152 13.9115924835205 108.680775137455 94.3333 94.0000 9.7872 124
1016 1 40.1492 0.8099 G 1.2340 132.1492 132.0000 16.5225 67 9.23618125915527 107.092988414559 92.8242 92.0000 10.0620 188
1017 1 50.1299 1.0113 G 1.3319 144.1299 135.0000 38.2053 77 9.90148735046387 108.213759435428 94.0714 94.0000 9.4758 188
1018 1 22.4000 0.4519 G 1.0693 115.4000 115.0000 12.3129 60 8.74038791656494 107.919597871185 93.0934 93.0000 9.9464 188
1019 1 24.3617 0.4914 G 1.0877 116.3617 116.0000 14.5331 47 7.73577785491943 106.98161926043 92.4780 92.0000 9.9877 188
1020 1 27.6769 0.5583 G 1.1076 118.6769 118.0000 11.3464 65 9.09728336334229 107.151501635525 91.8626 91.0000 10.7677 188

Total number of rows: 54359

Table truncated, full table size 6567 Kbytes.




Supplementary file Size Download File type/resource
GSM128553.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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