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Sample GSM128554 Query DataSets for GSM128554
Status Public on Mar 23, 2015
Title 2789_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6858.7788 133.8727 G 67.4870 6947.7788 4579.0000 6423.1597 142 13.4461898803711 102.949861276572 90.0583 89.0000 9.2999 124
1002 1 250.4286 4.8880 G 2.9075 343.4286 351.0000 128.8316 77 9.90148735046387 118.118510331734 94.1878 93.0000 16.7457 187
1003 1 35.5000 0.6929 G 1.2155 124.5000 117.0000 41.8157 72 9.57461452484131 102.423639994406 89.8611 89.0000 8.9491 186
1004 1 45.0984 0.8802 G 1.2705 136.0984 127.0000 39.9355 61 8.81292343139648 107.118052847654 92.0170 91.0000 10.7454 183
1005 1 33.1538 0.6471 G 1.1539 124.1538 116.0000 42.6421 65 9.09728336334229 107.596399685231 92.0714 91.0000 11.0643 188
1006 1 32.5970 0.6362 G 1.1856 122.5970 123.0000 12.7456 67 9.23618125915527 103.405868047854 90.5028 90.0000 8.9372 187
1007 1 37.0133 0.7224 G 1.2150 125.0133 124.0000 16.1547 75 9.77204990386963 102.895710503245 89.8901 88.0000 9.9305 188
1008 1 7132.3857 139.2131 G 67.9863 7223.3857 5573.0000 6720.2729 142 13.4461898803711 106.247622741245 92.7333 91.0000 10.1651 124
1009 1 281.6667 5.4977 G 3.4202 372.6667 399.0000 118.0221 84 10.3417663574219 108.96060470635 92.0934 91.0000 11.9737 188
1010 1 177.0667 3.4561 G 2.6098 267.0667 285.0000 91.2521 75 9.77204990386963 102.331582036594 89.9121 90.0000 8.2211 188
1011 1 105.2987 2.0553 G 1.8500 197.2987 179.0000 67.7959 77 9.90148735046387 106.650772361323 91.8950 92.0000 9.7672 187
1012 1 34.3016 0.6695 G 1.2035 124.3016 121.0000 15.9748 63 8.95623207092285 103.279207686215 91.1703 90.0000 8.8528 188
1013 1 33.2879 0.6497 G 1.1547 124.2879 123.0000 11.7277 66 9.16699600219727 107.634774317446 91.4615 91.0000 11.0899 188
1014 1 82.7200 1.6146 G 1.6275 173.7200 173.0000 29.1422 75 9.77204990386963 106.742859235673 91.5330 91.0000 10.4952 188
1015 1 6873.0405 134.1511 G 66.1304 6963.0405 5264.0000 6560.1846 150 13.8197660446167 105.292566722178 91.6667 90.0000 10.1950 124
1016 1 48.2239 0.9413 G 1.2355 141.2239 140.0000 22.2340 67 9.23618125915527 114.305008969399 94.7901 93.0000 14.2033 187
1017 1 65.5075 1.2786 G 1.3519 161.5075 156.0000 34.4913 67 9.23618125915527 119.463522222372 98.3167 96.0000 15.6423 186
1018 1 24.6774 0.4817 G 1.1062 112.6774 113.0000 11.2361 62 8.88486671447754 101.863634316032 88.8022 88.0000 9.2424 188
1019 1 27.0161 0.5273 G 1.1172 115.0161 113.0000 12.3608 62 8.88486671447754 102.950390156629 89.1099 88.0000 9.9669 188
1020 1 27.8400 0.5434 G 1.0680 119.8400 120.0000 14.0162 50 7.97884559631348 112.214210224814 92.1593 92.0000 13.4761 188

Total number of rows: 54359

Table truncated, full table size 6568 Kbytes.




Supplementary file Size Download File type/resource
GSM128554.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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